HL_7QVP_156

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QVP_156 not in the Motif Atlas

Homologous match to HL_8C3A_060

Geometric discrepancy: 0.0949

The information below is about HL_8C3A_060

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7QVP|1|L6|U|4321
7QVP|1|L6|G|4322
7QVP|1|L6|A|4323
7QVP|1|L6|A|4324
7QVP|1|L6|A|4325
7QVP|1|L6|G|4326

Current chains

Chain L6

28S ribosomal RNA

Nearby chains

Chain MD

60S ribosomal protein L5

Chain MT

60S ribosomal protein L21

Chain Mo

60S ribosomal protein L36a