HL_7QVP_157

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUUGGGUUUUA

Length

11 nucleotides

Bulged bases

7QVP|1|L6|U|4354

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QVP_157 not in the Motif Atlas

Geometric match to HL_3SUX_001

Geometric discrepancy: 0.3103

The information below is about HL_3SUX_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_14856.1

Basepair signature

cWW-cWW-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7QVP|1|L6|U|4352
7QVP|1|L6|U|4353
7QVP|1|L6|U|4354
7QVP|1|L6|G|4355
7QVP|1|L6|G|4356
7QVP|1|L6|G|4357
7QVP|1|L6|U|4358
7QVP|1|L6|U|4359
7QVP|1|L6|U|4360
7QVP|1|L6|U|4361
7QVP|1|L6|A|4362

Current chains

Chain L6

28S ribosomal RNA

Nearby chains

Chain ML

60S ribosomal protein L13

Chain Ma

60S ribosomal protein L27a

Chain Mi

60S ribosomal protein L36

Chain Mo

60S ribosomal protein L36a