HL_7QVP_160

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUGUUCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QVP_160 not in the Motif Atlas

Homologous match to HL_8C3A_064

Geometric discrepancy: 0.1084

The information below is about HL_8C3A_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36430.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7QVP|1|L6|U|4497
7QVP|1|L6|U|4498
7QVP|1|L6|G|4499
7QVP|1|L6|U|4500
7QVP|1|L6|U|4501
7QVP|1|L6|C|4502
7QVP|1|L6|A|4503

Current chains

Chain L6

28S ribosomal RNA

Nearby chains

Chain D5

Transfer RNA; tRNA

Chain MB

60S ribosomal protein L3