HL_7QVP_162

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QVP_162 not in the Motif Atlas

Homologous match to HL_8C3A_066

Geometric discrepancy: 0.0837

The information below is about HL_8C3A_066

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7QVP|1|L6|C|4603
7QVP|1|L6|G|4604
7QVP|1|L6|A|4605
7QVP|1|L6|G|4606
7QVP|1|L6|A|4607
7QVP|1|L6|G|4608

Current chains

Chain L6

28S ribosomal RNA

Nearby chains

Chain MH

60S ribosomal protein L9