HL_7QVP_167

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

7QVP|1|L6|U|4976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QVP_167 not in the Motif Atlas

Homologous match to HL_8C3A_071

Geometric discrepancy: 0.1016

The information below is about HL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

7QVP|1|L6|G|4975
7QVP|1|L6|U|4976
7QVP|1|L6|A|4977
7QVP|1|L6|G|4978
7QVP|1|L6|A|4979
7QVP|1|L6|C|4980
7QVP|1|L6|G|4981
7QVP|1|L6|A|4982
7QVP|1|L6|C|4983

Current chains

Chain L6

28S ribosomal RNA

Nearby chains

Chain MB

60S ribosomal protein L3

Chain MP

60S ribosomal protein L17