HL_7QVP_180

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCUUCGCGGG

Length

10 nucleotides

Bulged bases

7QVP|1|S2|C|199

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QVP_180 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.199

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

7QVP|1|S2|C|195
7QVP|1|S2|C|196
7QVP|1|S2|U|197
7QVP|1|S2|U|198
7QVP|1|S2|C|199
7QVP|1|S2|G|200
7QVP|1|S2|C|201
7QVP|1|S2|G|202
7QVP|1|S2|G|203
7QVP|1|S2|G|204

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SI

40S ribosomal protein S8