HL_7QVP_182

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCCCCGUG

Length

8 nucleotides

Bulged bases

7QVP|1|S2|C|325

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QVP_182 not in the Motif Atlas

Geometric match to HL_5J7L_018

Geometric discrepancy: 0.3368

The information below is about HL_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37344.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

7QVP|1|S2|C|322
7QVP|1|S2|C|323
7QVP|1|S2|C|324
7QVP|1|S2|C|325
7QVP|1|S2|C|326
7QVP|1|S2|G|327
7QVP|1|S2|U|328
7QVP|1|S2|G|329

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain LW

60S ribosomal protein L24

Chain SG

40S ribosomal protein S6