HL_7QVP_183
3D structure
- PDB id
- 7QVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human collided disome (di-ribosome) stalled on XBP1 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GUCGCCGUGCC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7QVP_183 not in the Motif Atlas
- Geometric match to HL_1KH6_003
- Geometric discrepancy: 0.3997
- The information below is about HL_1KH6_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_33487.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
7QVP|1|S2|G|377
7QVP|1|S2|U|378
7QVP|1|S2|C|379
7QVP|1|S2|G|380
7QVP|1|S2|C|381
7QVP|1|S2|C|382
7QVP|1|S2|G|383
7QVP|1|S2|U|384
7QVP|1|S2|G|385
7QVP|1|S2|C|386
7QVP|1|S2|C|387
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SI
- 40S ribosomal protein S8
- Chain SL
- 40S ribosomal protein S11
Coloring options: