HL_7QVP_205

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QVP_205 not in the Motif Atlas

Geometric match to HL_4V88_217

Geometric discrepancy: 0.3991

The information below is about HL_4V88_217

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_67216.9

Basepair signature

cWW-cWW-F-tSH

Number of instances in this motif group

9

Unit IDs

7QVP|1|S2|C|1460
7QVP|1|S2|G|1461
7QVP|1|S2|U|1462
7QVP|1|S2|U|1463
7QVP|1|S2|C|1464
7QVP|1|S2|A|1465
7QVP|1|S2|G|1466

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SR

40S ribosomal protein S17

Chain Sg

Receptor of activated protein C kinase 1