HL_7QVP_206

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGGCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QVP_206 not in the Motif Atlas

Geometric match to HL_7RQB_032

Geometric discrepancy: 0.179

The information below is about HL_7RQB_032

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

7QVP|1|S2|C|1565
7QVP|1|S2|G|1566
7QVP|1|S2|G|1567
7QVP|1|S2|C|1568
7QVP|1|S2|A|1569
7QVP|1|S2|G|1570

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SS

40S ribosomal protein S18

Chain ST

40S ribosomal protein S19