HL_7QVP_212
3D structure
- PDB id
- 7QVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human collided disome (di-ribosome) stalled on XBP1 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGGCCGGUACAG
- Length
- 12 nucleotides
- Bulged bases
- 7QVP|1|S3|G|74, 7QVP|1|S3|U|76
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7QVP_212 not in the Motif Atlas
- Geometric match to HL_361D_002
- Geometric discrepancy: 0.329
- The information below is about HL_361D_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_13963.3
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
7QVP|1|S3|C|69
7QVP|1|S3|G|70
7QVP|1|S3|G|71
7QVP|1|S3|C|72
7QVP|1|S3|C|73
7QVP|1|S3|G|74
7QVP|1|S3|G|75
7QVP|1|S3|U|76
7QVP|1|S3|A|77
7QVP|1|S3|C|78
7QVP|1|S3|A|79
7QVP|1|S3|G|80
Current chains
- Chain S3
- 18S ribosomal RNA
Nearby chains
- Chain MW
- 60S ribosomal protein L24
- Chain RG
- 40S ribosomal protein S6
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