HL_7QVP_214

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCUUGGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QVP_214 not in the Motif Atlas

Geometric match to HL_4YAZ_004

Geometric discrepancy: 0.2653

The information below is about HL_4YAZ_004

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

7QVP|1|S3|C|195
7QVP|1|S3|C|196
7QVP|1|S3|U|197
7QVP|1|S3|U|198
7QVP|1|S3|G|202
7QVP|1|S3|G|203
7QVP|1|S3|G|204

Current chains

Chain S3

18S ribosomal RNA

Nearby chains

Chain RI

40S ribosomal protein S8