HL_7QVP_216

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCGUG

Length

5 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QVP_216 not in the Motif Atlas

Geometric match to HL_5J7L_214

Geometric discrepancy: 0.2822

The information below is about HL_5J7L_214

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

7QVP|1|S3|C|322
7QVP|1|S3|C|323
7QVP|1|S3|G|327
7QVP|1|S3|U|328
7QVP|1|S3|G|329

Current chains

Chain S3

18S ribosomal RNA

Nearby chains

Chain MW

60S ribosomal protein L24

Chain RG

40S ribosomal protein S6