HL_7QVP_220

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

7QVP|1|S3|A|464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QVP_220 not in the Motif Atlas

Geometric match to HL_5Y85_004

Geometric discrepancy: 0.1416

The information below is about HL_5Y85_004

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

60

Unit IDs

7QVP|1|S3|C|462
7QVP|1|S3|C|463
7QVP|1|S3|A|464
7QVP|1|S3|A|465
7QVP|1|S3|G|466
7QVP|1|S3|G|467

Current chains

Chain S3

18S ribosomal RNA

Nearby chains

Chain MV

60S ribosomal protein L23

Chain RG

40S ribosomal protein S6