HL_7QVP_222

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GACUCUUUCGAGGC

Length

14 nucleotides

Bulged bases

7QVP|1|S3|C|539

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QVP|1|S3|G|535
7QVP|1|S3|A|536
7QVP|1|S3|C|537
7QVP|1|S3|U|538
7QVP|1|S3|C|539
7QVP|1|S3|U|540
7QVP|1|S3|U|541
7QVP|1|S3|U|542
7QVP|1|S3|C|543
7QVP|1|S3|G|544
7QVP|1|S3|A|545
7QVP|1|S3|G|546
7QVP|1|S3|G|547
7QVP|1|S3|C|548

Current chains

Chain S3

18S ribosomal RNA

Nearby chains

Chain Re

40S ribosomal protein S30

Chain SO

40S ribosomal protein S14

Chain Sa

40S ribosomal protein S26

Chain Sc

40S ribosomal protein S28