HL_7QVP_228

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUAUUUUUUUUCGG

Length

14 nucleotides

Bulged bases

7QVP|1|S3|U|890, 7QVP|1|S3|U|899

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QVP_228 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.2426

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

7QVP|1|S3|C|884
7QVP|1|S3|U|885
7QVP|1|S3|A|886
7QVP|1|S3|U|887
7QVP|1|S3|U|888
7QVP|1|S3|U|889
7QVP|1|S3|U|890
7QVP|1|S3|U|896
7QVP|1|S3|U|897
7QVP|1|S3|U|898
7QVP|1|S3|U|899
7QVP|1|S3|C|900
7QVP|1|S3|G|901
7QVP|1|S3|G|902

Current chains

Chain S3

18S ribosomal RNA

Nearby chains

Chain RL

40S ribosomal protein S11