HL_7QVP_230

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QVP_230 not in the Motif Atlas

Geometric match to HL_4V88_207

Geometric discrepancy: 0.1067

The information below is about HL_4V88_207

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7QVP|1|S3|C|994
7QVP|1|S3|G|995
7QVP|1|S3|A|996
7QVP|1|S3|A|997
7QVP|1|S3|A|998
7QVP|1|S3|G|999

Current chains

Chain S3

18S ribosomal RNA

Nearby chains

Chain RN

40S ribosomal protein S13

Chain Ra

40S ribosomal protein S26