HL_7QVP_234

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGCAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QVP_234 not in the Motif Atlas

Geometric match to HL_6N2V_002

Geometric discrepancy: 0.0815

The information below is about HL_6N2V_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

7QVP|1|S3|U|1178
7QVP|1|S3|G|1179
7QVP|1|S3|C|1180
7QVP|1|S3|A|1181
7QVP|1|S3|A|1182
7QVP|1|S3|A|1183

Current chains

Chain S3

18S ribosomal RNA

Nearby chains

Chain L6

Large subunit ribosomal RNA; LSU rRNA

Chain Mn

60S ribosomal protein L41

Chain Mp

60S ribosomal protein L37a