HL_7QWQ_007

3D structure

PDB id

7QWQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of ribosome nascent chain with SRP and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

7QWQ|1|5|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QWQ_007 not in the Motif Atlas

Homologous match to HL_5TBW_005

Geometric discrepancy: 0.2734

The information below is about HL_5TBW_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

7QWQ|1|5|U|204
7QWQ|1|5|C|205
7QWQ|1|5|U|206
7QWQ|1|5|G|207
7QWQ|1|5|A|208
7QWQ|1|5|U|209
7QWQ|1|5|C|210
7QWQ|1|5|G|211

Current chains

Chain 5

28S rRNA

Nearby chains

Chain Y

Ribosomal protein L26

Chain e

Ribosomal protein L32