RNA 3D Hub //

7QWQ Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7QWQ_0031/5/37:44No text annotation
homologous
HL_8C3A_001
NA
HL_7QWQ_0041/5/68:73No text annotation
homologous
HL_8C3A_002
NA
HL_7QWQ_0051/5/89:95No text annotation
homologous
HL_5TBW_003
NA
HL_7QWQ_0071/5/204:211T-loop with 2 stacked bulged bases
homologous
HL_5TBW_005
NA
HL_7QWQ_0081/5/222:226No text annotation
homologous
HL_8C3A_006
NA
HL_7QWQ_0091/5/230:238T-loop with unstacked turn
homologous
HL_8C3A_007
NA
HL_7QWQ_0101/5/289:298No text annotation
homologous
HL_5TBW_008
NA
HL_7QWQ_0111/5/314:323Pseudoknot geometry
geometric
HL_4QLM_002
HL_00911.2
HL_7QWQ_0121/5/368:373GNRA
homologous
HL_8C3A_010
NA
HL_7QWQ_0131/5/393:398GNRA
homologous
HL_8C3A_011
NA
HL_7QWQ_0171/5/1317:1326T-loop with 2 stacked bulged bases
homologous
HL_8C3A_014
NA
HL_7QWQ_0181/5/1364:1373Externally structured
geometric
HL_8C3A_022
NA
HL_7QWQ_0191/5/1389:1394GNRA
homologous
HL_8C3A_016
NA
HL_7QWQ_0221/5/1479:1486UNCG variation
geometric
HL_6VMY_004
HL_51020.2
HL_7QWQ_0231/5/1561:1566GNRA
homologous
HL_8C3A_019
NA
HL_7QWQ_0241/5/1593:1602No text annotation
homologous
HL_8C3A_020
NA
HL_7QWQ_0251/5/1627:1635No text annotation
homologous
HL_8C3A_021
NA
HL_7QWQ_0261/5/1675:1680Externally structured
homologous
HL_8C3A_022
NA
HL_7QWQ_0281/5/1814:1823No text annotation
HL_7QWQ_0291/5/1864:1870GNRA
homologous
HL_8C3A_025
NA
HL_7QWQ_0301/5/1886:1893No text annotation
homologous
HL_5TBW_026
NA
HL_7QWQ_0331/5/2317:2322GNRA
homologous
HL_8C3A_030
NA
HL_7QWQ_0341/5/2376:2384T-loop with 2 stacked bulged bases
homologous
HL_8C3A_031
NA
HL_7QWQ_0351/5/2420:2426Pseudoknot geometry with 3' bulge
homologous
HL_5TBW_032
NA
HL_7QWQ_0361/5/2458:2463GNRA variation
homologous
HL_8C3A_033
NA
HL_7QWQ_0381/5/2523:2532No text annotation
homologous
HL_8C3A_035
NA
HL_7QWQ_0401/5/2578:2583GNRA
homologous
HL_8C3A_036
NA
HL_7QWQ_0411/5/2624:2632No text annotation
homologous
HL_8C3A_037
NA
HL_7QWQ_0421/5/2664:2670Other HL
geometric
HL_4V9F_039
HL_67772.1
HL_7QWQ_0441/5/2738:2742No text annotation
homologous
HL_8C3A_040
NA
HL_7QWQ_0451/5/2792:2799No text annotation
homologous
HL_8C3A_041
NA
HL_7QWQ_0461/5/2810:2816GNRA
homologous
HL_5TBW_042
NA
HL_7QWQ_0471/5/2872:2877UNCG
homologous
HL_8C3A_043
NA
HL_7QWQ_0481/5/3614:3618No text annotation
homologous
HL_8C3A_045
NA
HL_7QWQ_0491/5/3639:3649No text annotation
homologous
HL_8C3A_046
NA
HL_7QWQ_0501/5/3668:3674GNRA
homologous
HL_8C3A_047
NA
HL_7QWQ_0511/5/3724:3729GNRA
homologous
HL_5TBW_048
NA
HL_7QWQ_0521/5/3757:3767No text annotation
homologous
HL_8C3A_049
NA
HL_7QWQ_0531/5/3796:3804No text annotation
homologous
HL_8C3A_050
NA
HL_7QWQ_0541/5/3873:3882No text annotation
homologous
HL_8C3A_051
NA
HL_7QWQ_0571/5/4193:4201No text annotation
homologous
HL_8C3A_055
NA
HL_7QWQ_0581/5/4210:4222No text annotation
homologous
HL_8C3A_056
NA
HL_7QWQ_0591/5/4250:4258No text annotation
homologous
HL_8C3A_057
NA
HL_7QWQ_0601/5/4270:4277Pseudoknot geometry
homologous
HL_5TBW_057
NA
HL_7QWQ_0611/5/4301:4309No text annotation
homologous
HL_8C3A_059
NA
HL_7QWQ_0621/5/4321:4326GNRA
homologous
HL_8C3A_060
NA
HL_7QWQ_0631/5/4352:4362No text annotation
geometric
HL_2ZZM_002
HL_33487.1
HL_7QWQ_0641/5/4417:4425No text annotation
homologous
HL_8C3A_062
NA
HL_7QWQ_0651/5/4474:4481No text annotation
homologous
HL_8C3A_063
NA
HL_7QWQ_0661/5/4497:4503No text annotation
homologous
HL_8C3A_064
NA
HL_7QWQ_0671/5/4540:4545GNRA
homologous
HL_5TBW_064
NA
HL_7QWQ_0681/5/4603:4608GNRA
homologous
HL_8C3A_066
NA
HL_7QWQ_0691/5/4646:4651Ribsomal LSU H95
homologous
HL_8C3A_067
NA
HL_7QWQ_0701/5/4688:4702No text annotation
homologous
HL_8C3A_068
NA
HL_7QWQ_0711/5/4907:4914No text annotation
geometric
HL_8C3A_054
NA
HL_7QWQ_0721/5/4975:4983No text annotation
homologous
HL_8C3A_071
NA
HL_7QWQ_0801/7/32:45No text annotation
homologous
HL_8C3A_228
NA
HL_7QWQ_0741/7/36:41No text annotation
homologous
HL_5TBW_185
NA
HL_7QWQ_0751/7/86:91GNRA
homologous
HL_5TBW_186
NA
HL_7QWQ_0761/8/55:62No text annotation
geometric
HL_4P5J_004
HL_08550.2
HL_7QWQ_0771/8/68:90No text annotation
homologous
HL_8C3A_075
NA
HL_7QWQ_0781/8/107:112No text annotation
homologous
HL_5TBW_075
NA

Problematic loops

#loop idProblemSequence
HL_7QWQ_001GNRA variation
HL_7QWQ_002GNRA
HL_7QWQ_006No text annotation
HL_7QWQ_014No text annotation
HL_7QWQ_015No text annotation
HL_7QWQ_016GNRA
HL_7QWQ_020Mini UNCG
HL_7QWQ_021No text annotation
HL_7QWQ_027GNRA
HL_7QWQ_031No text annotation
HL_7QWQ_032No text annotation
HL_7QWQ_037Externally structured
HL_7QWQ_039GNRA
HL_7QWQ_043No text annotation
HL_7QWQ_055Mini UNCG
HL_7QWQ_056No text annotation
HL_7QWQ_073No text annotation
HL_7QWQ_079No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7QWQ_0141/5/6:7,
1/8/149:151		No text annotation
IL_7QWQ_0151/5/11:14,
1/8/143:145		Isolated non-canonical cWW pair
geometric
IL_5TBW_378
NA
IL_7QWQ_0161/5/16:18,
1/8/139:141		No text annotation
geometric
IL_3ICQ_003
NA
IL_7QWQ_0171/5/26:27,
1/5/55:57		No text annotation
homologous
IL_8C3A_004
NA
IL_7QWQ_0181/5/30:37,
1/5/44:52		9x8 Sarcin-Ricin; G-bulge
geometric
IL_4WF9_008
IL_93502.1
IL_7QWQ_0191/5/81:88,
1/5/96:102		No text annotation
homologous
IL_8C3A_006
NA
IL_7QWQ_0201/5/118:121,
1/5/152:153		Stack outside cWW
geometric
IL_5J7L_268
NA
IL_7QWQ_1771/5/118:122,
1/5/147:153		No text annotation
IL_7QWQ_0211/5/121:122,
1/5/147:152		No text annotation
homologous
IL_8C3A_007
NA
IL_7QWQ_0221/5/125:126,
1/5/142:144		Single bulged C
geometric
IL_1S03_006
IL_05642.2
IL_7QWQ_0231/5/168:173,
1/5/263:267		No text annotation
IL_7QWQ_0261/5/195:196,
1/5/244:246		Single bulged C
geometric
IL_4WF9_035
IL_05642.2
IL_7QWQ_0271/5/199:201,
1/5/214:215		Single bulged U
homologous
IL_8C3A_013
NA
IL_7QWQ_0281/5/339:342,
1/8/32:33		Minor groove platform, major groove intercalation
geometric
IL_1U9S_005
IL_55206.1
IL_7QWQ_0291/5/348:350,
1/8/25:26		Single bulged A
homologous
IL_8C3A_014
NA
IL_7QWQ_0301/5/387:390,
1/5/401:414		No text annotation
homologous
IL_8C3A_015
NA
IL_7QWQ_0311/5/415:421,
1/8/13:19		Triple sheared with non-canonical cWW
homologous
IL_8C3A_016
NA
IL_7QWQ_0321/5/443:446,
1/5/1300:1304		No text annotation
geometric
IL_7MLW_007
IL_49140.1
IL_7QWQ_0331/5/459:460,
1/5/695:697		No text annotation
IL_7QWQ_0341/5/482:486,
1/5/670:672		No text annotation
geometric
IL_4ZC7_002
NA
IL_7QWQ_0351/5/488:490,
1/5/664:668		Decoding loop related
geometric
IL_3C3Z_002
IL_53541.1
IL_7QWQ_0391/5/708:709,
1/5/1287:1289		Single bulged G
geometric
IL_4LFB_036
IL_28408.2
IL_7QWQ_0401/5/722:724,
1/5/942:946		No text annotation
IL_7QWQ_0411/5/726:731,
1/5/938:940		No text annotation
IL_7QWQ_1791/5/726:735,
1/5/928:940		No text annotation
IL_7QWQ_0421/5/731:735,
1/5/928:938		No text annotation
IL_7QWQ_0431/5/735:737,
1/5/927:928		Single stack bend
geometric
IL_5J7L_044
NA
IL_7QWQ_0461/5/1073:1075,
1/5/1236:1239		No text annotation
IL_7QWQ_0491/5/1082:1085,
1/5/1212:1217		Tandem non-canonical cWW pairs
geometric
IL_7VYX_002
IL_15225.2
IL_7QWQ_0501/5/1086:1087,
1/5/1209:1211		Single bulged C
geometric
IL_3W3S_001
IL_05642.2
IL_7QWQ_0531/5/1357:1360,
1/5/1378:1382		No text annotation
IL_7QWQ_0541/5/1360:1361,
1/5/1376:1378		No text annotation
IL_7QWQ_0551/5/1425:1429,
1/5/1455:1460		Triple sheared related
geometric
IL_4V9F_018
IL_67427.1
IL_7QWQ_0561/5/1431:1434,
1/5/1450:1453		Double sheared
geometric
IL_4WF9_087
IL_58355.2
IL_7QWQ_0571/5/1467:1468,
1/5/1496:1498		Single bulged A
homologous
IL_8C3A_026
NA
IL_7QWQ_0581/5/1474:1476,
1/5/1489:1490		Single stack bend
geometric
IL_7A0S_005
IL_15011.2
IL_7QWQ_0591/5/1520:1522,
1/5/1655:1657		Isolated non-canonical cWW pair
homologous
IL_8C3A_029
NA
IL_7QWQ_0601/5/1522:1526,
1/5/1648:1655		tHW-tHW cross-strand stack
geometric
IL_5TBW_028
NA
IL_7QWQ_0611/5/1550:1551,
1/5/1576:1578		Single bulged G
homologous
IL_8C3A_032
NA
IL_7QWQ_0621/5/1551:1555,
1/5/1572:1576		Triple sheared
geometric
IL_7RQB_021
NA
IL_7QWQ_0631/5/1586:1589,
1/5/1605:1607		Major groove platform with extra cWW
homologous
IL_8C3A_034
NA
IL_7QWQ_0641/5/1590:1592,
1/5/1603:1604		Single bulged U
homologous
IL_8C3A_035
NA
IL_7QWQ_0651/5/1624:1626,
1/5/1636:1640		Multiple bulged bases
geometric
IL_5TBW_033
NA
IL_7QWQ_0661/5/1671:1673,
1/5/1682:1684		Isolated non-canonical cWW pair
homologous
IL_8C3A_037
NA
IL_7QWQ_0671/5/1686:1688,
1/5/1848:1851		No text annotation
IL_7QWQ_1801/5/1723:1725,
1/5/1837:1839		Single stack bend
geometric
IL_7KGA_003
IL_15011.2
IL_7QWQ_0691/5/1732:1737,
1/5/1792:1797		5x5 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_7A0S_027
NA
IL_7QWQ_0701/5/1737:1738,
1/5/1790:1792		Minor groove platform
geometric
IL_6DLR_003
IL_34520.3
IL_7QWQ_0711/5/1739:1744,
1/5/1786:1789		C-loop with bulged stacked A's
homologous
IL_8C3A_043
NA
IL_7QWQ_0721/5/1746:1749,
1/5/1781:1784		Tandem non-canonical cWW pairs
homologous
IL_5TBW_041
NA
IL_7QWQ_0731/5/1749:1751,
1/5/1779:1781		Isolated non-canonical cWW pair
geometric
IL_5TBW_042
NA
IL_7QWQ_0771/5/1858:1860,
1/5/1874:1876		Isolated non-canonical cWW pair
homologous
IL_5TBW_046
NA
IL_7QWQ_0781/5/1905:1909,
1/5/2067:2071		UAA/GAN
homologous
IL_8C3A_051
NA
IL_7QWQ_0791/5/1911:1918,
1/5/2064:2065		SSU/LSU pseudoknot
geometric
IL_7RQB_037
NA
IL_7QWQ_0801/5/1918:1920,
1/5/2063:2064		No text annotation
IL_7QWQ_0811/5/1920:1922,
1/5/2062:2063		No text annotation
IL_7QWQ_0821/5/1926:1933,
1/5/2053:2058		No text annotation
homologous
IL_8C3A_054
NA
IL_7QWQ_0831/5/1933:1944,
1/5/2038:2053		No text annotation
geometric
IL_5TBW_052
NA
IL_7QWQ_0841/5/1946:1948,
1/5/2035:2036		Single bulged U
homologous
IL_5TBW_053
NA
IL_7QWQ_0851/5/2083:2085,
1/5/2272:2273		No text annotation
IL_7QWQ_0861/5/2290:2292,
1/5/2342:2345		No text annotation
homologous
IL_8C3A_061
NA
IL_7QWQ_0871/5/2299:2301,
1/5/2334:2335		Single bulged A
homologous
IL_8C3A_062
NA
IL_7QWQ_0881/5/2302:2309,
1/5/2329:2333		Kink-turn
homologous
IL_8C3A_063
NA
IL_7QWQ_0891/5/2312:2314,
1/5/2325:2326		Single bulged A
geometric
IL_5WWT_001
IL_14190.2
IL_7QWQ_0901/5/2358:2364,
1/5/3858:3863		7x6 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_061
NA
IL_7QWQ_0911/5/2415:2419,
1/5/2427:2429		C-loop
geometric
IL_4MGN_001
IL_63596.12
IL_7QWQ_0921/5/2446:2450,
1/5/2509:2514		UAA/GAN
homologous
IL_8C3A_067
NA
IL_7QWQ_0941/5/2542:2547,
1/5/2772:2774		Isolated non-canonical cWW pair
geometric
IL_5TBW_145
NA
IL_7QWQ_0961/5/2613:2614,
1/5/2724:2726		Single bulged A
geometric
IL_7A0S_012
IL_14190.2
IL_7QWQ_0971/5/2614:2615,
1/5/2722:2724		Single stack bend
homologous
IL_8C3A_076
NA
IL_7QWQ_0981/5/2646:2648,
1/5/2685:2688		Isolated tHS basepair with bulges
geometric
IL_4V9F_076
IL_87316.2
IL_7QWQ_0991/5/2651:2653,
1/5/2681:2682		Single bulged G
geometric
IL_2IZN_001
IL_28408.2
IL_7QWQ_1001/5/2656:2662,
1/5/2672:2678		Kink-turn
homologous
IL_5TBW_073
NA
IL_7QWQ_1011/5/2704:2705,
1/5/2710:2712		No text annotation
IL_7QWQ_1021/5/2832:2838,
1/5/3850:3853		No text annotation
homologous
IL_5TBW_074
NA
IL_7QWQ_1031/5/2844:2846,
1/5/3842:3844		No text annotation
homologous
IL_8C3A_081
NA
IL_7QWQ_1041/5/2847:2850,
1/5/3840:3841		Major groove platform; stack outside cWW
homologous
IL_8C3A_082
NA
IL_7QWQ_1821/5/2847:2855,
1/5/3837:3841		No text annotation
homologous
IL_8C3A_484
NA
IL_7QWQ_1051/5/2850:2855,
1/5/3837:3840		Intercalated tWH
geometric
IL_5TBW_077
NA
IL_7QWQ_1061/5/2867:2872,
1/5/2877:2883		No text annotation
homologous
IL_8C3A_084
NA
IL_7QWQ_1071/5/2889:2891,
1/5/3610:3612		Isolated non-canonical cWW pair
homologous
IL_8C3A_085
NA
IL_7QWQ_1111/5/3632:3633,
1/5/3827:3829		Single bulged A
homologous
IL_5TBW_082
NA
IL_7QWQ_1121/5/3660:3665,
1/5/3677:3684		No text annotation
homologous
IL_8C3A_088
NA
IL_7QWQ_1131/5/3700:3703,
1/5/3749:3750		No text annotation
homologous
IL_8C3A_089
NA
IL_7QWQ_1141/5/3704:3705,
1/5/3745:3748		Multiple bulged bases
homologous
IL_8C3A_090
NA
IL_7QWQ_1151/5/3708:3710,
1/5/3741:3742		Single stack bend
homologous
IL_8C3A_091
NA
IL_7QWQ_1881/5/3710:3713,
1/5/3740:3741		No text annotation
IL_7QWQ_1171/5/3715:3721,
1/5/3732:3738		No text annotation
homologous
IL_8C3A_093
NA
IL_7QWQ_1181/5/3780:3781,
1/5/3811:3814		Bulged stacked bases
geometric
IL_5TBW_089
NA
IL_7QWQ_1191/5/3781:3792,
1/5/3808:3811		No text annotation
homologous
IL_8C3A_095
NA
IL_7QWQ_1201/5/3895:3898,
1/5/4563:4565		No text annotation
homologous
IL_8C3A_096
NA
IL_7QWQ_1211/5/3900:3902,
1/5/4558:4561		Major groove platform with intercalation
homologous
IL_5TBW_092
NA
IL_7QWQ_1221/5/3913:3915,
1/5/4388:4389		Single bulged U
homologous
IL_8C3A_098
NA
IL_7QWQ_1231/5/3916:3917,
1/5/4384:4387		Minor groove platform
homologous
IL_5TBW_094
NA
IL_7QWQ_1241/5/3927:3929,
1/5/4181:4184		Isolated tHS basepair with bulges
homologous
IL_5TBW_095
NA
IL_7QWQ_1251/5/4082:4088,
1/5/4161:4164		No text annotation
homologous
IL_8C3A_106
NA
IL_7QWQ_1281/5/4191:4192,
1/5/4202:4204		Single bulged A
homologous
IL_8C3A_107
NA
IL_7QWQ_1291/5/4243:4245,
1/5/4263:4267		No text annotation
homologous
IL_8C3A_108
NA
IL_7QWQ_1301/5/4291:4293,
1/5/4317:4318		Single bulged A
geometric
IL_4V88_399
NA
IL_7QWQ_1311/5/4295:4298,
1/5/4312:4315		Tandem non-canonical cWW pairs
homologous
IL_5TBW_100
NA
IL_7QWQ_1321/5/4347:4350,
1/5/4364:4365		Single stack bend
geometric
IL_5J7L_032
NA
IL_7QWQ_1331/5/4400:4401,
1/5/4442:4444		Major groove platform
homologous
IL_5TBW_102
NA
IL_7QWQ_1841/5/4400:4403,
1/5/4440:4444		No text annotation
homologous
IL_8C3A_111
NA
IL_7QWQ_1341/5/4401:4403,
1/5/4440:4442		Isolated non-canonical cWW pair
geometric
IL_5J7L_259
NA
IL_7QWQ_1351/5/4403:4405,
1/5/4439:4440		Major groove platform
homologous
IL_8C3A_112
NA
IL_7QWQ_1891/5/4405:4407,
1/5/4435:4439		No text annotation
homologous
IL_8CRE_113
NA
IL_7QWQ_1371/5/4412:4416,
1/5/4426:4430		Triple sheared
homologous
IL_5TBW_106
NA
IL_7QWQ_1381/5/4453:4454,
1/5/4526:4528		Major groove platform
homologous
IL_8C3A_115
NA
IL_7QWQ_1391/5/4456:4458,
1/5/4520:4524		No text annotation
homologous
IL_8C3A_116
NA
IL_7QWQ_1401/5/4458:4459,
1/5/4517:4520		Multiple bulged bases
geometric
IL_5TBW_109
NA
IL_7QWQ_1411/5/4466:4468,
1/5/4489:4491		Isolated non-canonical cWW pair
geometric
IL_4YHW_001
NA
IL_7QWQ_1851/5/4466:4470,
1/5/4485:4491		No text annotation
IL_7QWQ_1421/5/4468:4470,
1/5/4485:4489		No text annotation
IL_7QWQ_1431/5/4495:4497,
1/5/4503:4505		Isolated non-canonical cWW pair
homologous
IL_8C3A_120
NA
IL_7QWQ_1441/5/4537:4538,
1/5/4547:4549		Single bulged A
homologous
IL_5TBW_113
NA
IL_7QWQ_1451/5/4580:4582,
1/5/4721:4723		No text annotation
geometric
IL_3ICQ_003
NA
IL_7QWQ_1461/5/4582:4585,
1/5/4717:4721		Double sheared
homologous
IL_8C3A_123
NA
IL_7QWQ_1471/5/4590:4592,
1/5/4618:4620		Isolated non-canonical cWW pair
homologous
IL_8C3A_124
NA
IL_7QWQ_1481/5/4596:4603,
1/5/4608:4614		8x7 Sarcin-Ricin; G-bulge
homologous
IL_8C3A_125
NA
IL_7QWQ_1491/5/4624:4629,
1/5/4669:4673		No text annotation
IL_7QWQ_1501/5/4632:4637,
1/5/4662:4666		UAA/GAN related
homologous
IL_5TBW_118
NA
IL_7QWQ_1511/5/4638:4640,
1/5/4659:4661		Isolated cWH basepair
geometric
IL_3R1C_012
IL_10892.2
IL_7QWQ_1521/5/4641:4642,
1/5/4655:4658		Multiple bulged bases
homologous
IL_5TBW_119
NA
IL_7QWQ_1531/5/4681:4685,
1/5/4705:4709		UAA/GAN
homologous
IL_8C3A_129
NA
IL_7QWQ_1551/5/4742:4746,
1/5/4954:4958		No text annotation
IL_7QWQ_1561/5/4755:4766,
1/5/4868:4878		No text annotation
IL_7QWQ_1571/5/4768:4772,
1/5/4863:4866		No text annotation
geometric
IL_2O3V_003
IL_34618.2
IL_7QWQ_1591/5/4891:4896,
1/5/4924:4928		No text annotation
IL_7QWQ_1611/5/4972:4975,
1/5/4983:4986		Tandem non-canonical cWW pairs
homologous
IL_8C3A_135
NA
IL_7QWQ_1901/5/4992:4994,
1/5/5057:5059		Isolated non-canonical cWW pair
geometric
IL_7QUA_003
IL_01003.3
IL_7QWQ_1631/5/4996:4997,
1/5/5053:5055		Single bulged C
geometric
IL_1KUQ_002
IL_05642.2
IL_7QWQ_1641/5/5000:5002,
1/5/5045:5050		Isolated non-canonical cWW pair
homologous
IL_5TBW_132
NA
IL_7QWQ_1651/5/5003:5009,
1/5/5039:5044		No text annotation
IL_7QWQ_1661/5/5012:5014,
1/5/5035:5036		Single bulged U
homologous
IL_8C3A_140
NA
IL_7QWQ_1671/5/5014:5017,
1/5/5032:5035		Double sheared; A in syn
homologous
IL_8C3A_141
NA
IL_7QWQ_1681/7/15:16,
1/7/62:64		Single bulged A
homologous
IL_5TBW_372
NA
IL_7QWQ_1691/7/21:27,
1/7/52:57		Minor groove platform related
homologous
IL_5TBW_373
NA
IL_7QWQ_1701/7/28:29,
1/7/48:51		Major groove minor groove platform; mini C-loop
homologous
IL_7RQB_113
NA
IL_7QWQ_1711/7/32:36,
1/7/41:45		Symmetric double minor groove platform
geometric
IL_7RQB_114
NA
IL_7QWQ_1721/7/71:78,
1/7/98:104		8x7 Sarcin-Ricin; G-bulge
geometric
IL_7A0S_007
IL_62167.3
IL_7QWQ_1731/7/79:81,
1/7/95:97		Isolated non-canonical cWW pair
geometric
IL_4E48_001
IL_01003.3
IL_7QWQ_1741/7/82:85,
1/7/92:94		Isolated non-canonical cWW pair
homologous
IL_5TBW_378
NA
IL_7QWQ_1871/8/44:64,
1/8/95:99		No text annotation
homologous
IL_8C3A_150
NA
IL_7QWQ_1751/8/64:66,
1/8/92:95		Isolated non-canonical cWW pair
homologous
IL_5TBW_145
NA

Problematic loops

#loop idProblemSequence
IL_7QWQ_001Single stack bend
IL_7QWQ_002No text annotation
IL_7QWQ_176No text annotation
IL_7QWQ_003No text annotation
IL_7QWQ_004No text annotation
IL_7QWQ_005Single bulged G
IL_7QWQ_006No text annotation
IL_7QWQ_007Tandem non-canonical cWW pairs
IL_7QWQ_008No text annotation
IL_7QWQ_009Tandem non-canonical cWW pairs
IL_7QWQ_010Single bulged A
IL_7QWQ_011No text annotation
IL_7QWQ_012No text annotation
IL_7QWQ_013tSH-tHW-tHS-cWW
IL_7QWQ_024Single stack bend
IL_7QWQ_178No text annotation
IL_7QWQ_025Multiple bulged bases
IL_7QWQ_036No text annotation
IL_7QWQ_037Single stack bend
IL_7QWQ_038No text annotation
IL_7QWQ_044Isolated non-canonical cWW pair
IL_7QWQ_045No text annotation
IL_7QWQ_047No text annotation
IL_7QWQ_048Major groove intercalation
IL_7QWQ_051Single stack bend
IL_7QWQ_052Isolated near basepair
IL_7QWQ_068No text annotation
IL_7QWQ_074No text annotation
IL_7QWQ_075Single stack bend
IL_7QWQ_181No text annotation
IL_7QWQ_076No text annotation
IL_7QWQ_093Not an internal loop
IL_7QWQ_095Triple sheared
IL_7QWQ_108No text annotation
IL_7QWQ_109No text annotation
IL_7QWQ_110Single stack bend
IL_7QWQ_116No text annotation
IL_7QWQ_126Single stack bend
IL_7QWQ_183No text annotation
IL_7QWQ_127Single stack bend
IL_7QWQ_136No text annotation
IL_7QWQ_154No text annotation
IL_7QWQ_186Tandem non-canonical cWW pairs
IL_7QWQ_158Partly complementary
IL_7QWQ_160No text annotation
IL_7QWQ_162Tandem non-canonical cWW pairs

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7QWQ_0021/5/112:116,
1/5/155:160,
1/5/275:278		No text annotation
J3_7QWQ_0201/5/196:199,
1/5/215:228,
1/5/240:244		No text annotation
J3_7QWQ_0211/5/351:367,
1/5/374:379,
1/8/21:24		No text annotation
homologous
J3_8P9A_045
J3_07616.1
J3_7QWQ_0031/5/380:387,
1/5/414:415,
1/8/19:20		No text annotation
homologous
J3_5TBW_002
NA
J3_7QWQ_0221/5/380:390,
1/5/401:415,
1/8/19:20		No text annotation
homologous
J3_8C3A_049
NA
J3_7QWQ_0051/5/711:713,
1/5/955:976,
1/5/1278:1285		No text annotation
J3_7QWQ_0071/5/1531:1537,
1/5/1622:1624,
1/5/1640:1643		No text annotation
homologous
J3_8C3A_003
NA
J3_7QWQ_0081/5/1545:1548,
1/5/1580:1584,
1/5/1609:1614		No text annotation
homologous
J3_5TBW_005
NA
J3_7QWQ_0091/5/1726:1727,
1/5/1802:1806,
1/5/1832:1836		No text annotation
J3_7QWQ_0101/5/2393:2399,
1/5/2805:2807,
1/5/2819:2822		No text annotation
homologous
J3_5TBW_008
NA
J3_7QWQ_0111/5/2402:2405,
1/5/2785:2791,
1/5/2800:2802		No text annotation
homologous
J3_8C3A_007
NA
J3_7QWQ_0121/5/2440:2445,
1/5/2515:2519,
1/5/2536:2537		No text annotation
homologous
J3_5TBW_010
NA
J3_7QWQ_0231/5/2451:2456,
1/5/2465:2476,
1/5/2501:2508		No text annotation
J3_7QWQ_0241/5/2598:2602,
1/5/2737:2738,
1/5/2742:2747		No text annotation
homologous
J3_8P9A_058
J3_08594.1
J3_7QWQ_0131/5/3937:3939,
1/5/4074:4078,
1/5/4168:4173		No text annotation
geometric
J3_8VTW_006
NA
J3_7QWQ_0141/5/4092:4094,
1/5/4114:4129,
1/5/4155:4158		No text annotation
J3_7QWQ_0251/5/4228:4230,
1/5/4331:4342,
1/5/4370:4375		No text annotation
homologous
J3_8C3A_056
NA
J3_7QWQ_0151/5/4241:4243,
1/5/4267:4269,
1/5/4278:4283		No text annotation
homologous
J3_8C3A_010
NA
J3_7QWQ_0161/5/4463:4466,
1/5/4491:4493,
1/5/4507:4513		No text annotation
homologous
J3_8C3A_011
NA
J3_7QWQ_0261/5/4748:4754,
1/5/4879:4884,
1/5/4935:4952		No text annotation
J3_7QWQ_0171/5/4970:4972,
1/5/4986:4991,
1/5/5060:5063		No text annotation
J3_7QWQ_0181/7/9:14,
1/7/65:66,
1/7/109:110		No text annotation
homologous
J3_5TBW_045
NA
J3_7QWQ_0191/8/44:55,
1/8/62:64,
1/8/95:99		No text annotation
geometric
J3_4WF9_001
J3_47707.1
J4_7QWQ_0011/5/111:112,
1/5/278:283,
1/5/304:310,
1/5/327:330		No text annotation
homologous
J4_8P9A_012
J4_94698.1
J4_7QWQ_0021/5/196:199,
1/5/215:222,
1/5/226:228,
1/5/240:244		No text annotation
J4_7QWQ_0031/5/2365:2371,
1/5/2389:2391,
1/5/2824:2829,
1/5/3856:3857		No text annotation
J4_7QWQ_0041/5/2406:2410,
1/5/2434:2439,
1/5/2538:2539,
1/5/2777:2784		No text annotation
homologous
J4_8C3A_004
NA
J4_7QWQ_0051/5/2549:2555,
1/5/2572:2576,
1/5/2585:2589,
1/5/2756:2770		No text annotation
J4_7QWQ_0061/5/2618:2619,
1/5/2637:2642,
1/5/2692:2698,
1/5/2718:2719		No text annotation
J4_7QWQ_0071/5/3634:3638,
1/5/3650:3654,
1/5/3690:3694,
1/5/3821:3826		No text annotation
homologous
J4_8C3A_006
NA
J4_7QWQ_0081/5/3696:3698,
1/5/3752:3754,
1/5/3770:3780,
1/5/3814:3819		No text annotation
J4_7QWQ_0091/5/4231:4235,
1/5/4289:4291,
1/5/4318:4319,
1/5/4328:4330		No text annotation
J4_7QWQ_0101/5/4587:4590,
1/5/4620:4621,
1/5/4676:4678,
1/5/4712:4715		No text annotation
J5_7QWQ_0011/5/19:21,
1/8/35:42,
1/8/101:106,
1/8/113:114,
1/8/136:138		No text annotation
homologous
J5_8P9A_010
J5_27223.1
J5_7QWQ_0021/5/1335:1340,
1/5/1516:1519,
1/5/1658:1661,
1/5/2288:2290,
1/5/2345:2351		No text annotation
homologous
J5_8C3A_002
NA
J5_7QWQ_0031/5/2855:2863,
1/5/2887:2888,
1/5/3613:3614,
1/5/3618:3626,
1/5/3835:3837		No text annotation
homologous
J5_8C3A_004
NA
J5_7QWQ_0041/5/3903:3910,
1/5/4392:4400,
1/5/4444:4453,
1/5/4528:4534,
1/5/4552:4557		No text annotation
J5_7QWQ_0051/5/3920:3923,
1/5/4188:4191,
1/5/4204:4205,
1/5/4227:4228,
1/5/4375:4381		No text annotation
homologous
J5_8P9A_015
J5_96125.1
J6_7QWQ_0011/5/21:26,
1/5/57:67,
1/5/74:78,
1/5/105:109,
1/5/332:339,
1/8/33:35		No text annotation
J6_7QWQ_0021/5/1352:1355,
1/5/1384:1388,
1/5/1395:1399,
1/5/1418:1421,
1/5/1464:1466,
1/5/1499:1504		No text annotation
J6_7QWQ_0031/5/3920:3923,
1/5/4188:4191,
1/5/4204:4205,
1/5/4227:4230,
1/5/4331:4342,
1/5/4370:4381		No text annotation
J7_7QWQ_0011/5/1666:1671,
1/5/1684:1685,
1/5/1852:1855,
1/5/1879:1884,
1/5/1895:1899,
1/5/2077:2078,
1/5/2278:2283		No text annotation

Problematic loops

#loop idProblemSequence
J3_7QWQ_001No text annotation
J3_7QWQ_027No text annotation
J3_7QWQ_004No text annotation
J3_7QWQ_006No text annotation

Coloring options:
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