HL_7QWR_005

3D structure

PDB id

7QWR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-nascent chain containing an ER signal sequence in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

7QWR|1|5|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QWR_005 not in the Motif Atlas

Homologous match to HL_5TBW_005

Geometric discrepancy: 0.2943

The information below is about HL_5TBW_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

7QWR|1|5|U|204
7QWR|1|5|C|205
7QWR|1|5|U|206
7QWR|1|5|G|207
7QWR|1|5|A|208
7QWR|1|5|U|209
7QWR|1|5|C|210
7QWR|1|5|G|211

Current chains

Chain 5

28S rRNA

Nearby chains

Chain Y

Ribosomal protein L26