7QWR Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7QWR_001 | 1/5/37:44 | No text annotation | homologous HL_5TBW_001 NA | |
| HL_7QWR_002 | 1/5/68:73 | No text annotation | homologous HL_5TBW_002 NA | |
| HL_7QWR_003 | 1/5/89:95 | No text annotation | homologous HL_5TBW_003 NA | |
| HL_7QWR_004 | 1/5/131:137 | No text annotation | geometric HL_2Y8W_001 HL_81100.2 | |
| HL_7QWR_005 | 1/5/204:211 | T-loop with 2 stacked bulged bases | homologous HL_5TBW_005 NA | |
| HL_7QWR_006 | 1/5/222:226 | No text annotation | homologous HL_5TBW_006 NA | |
| HL_7QWR_007 | 1/5/230:238 | T-loop with unstacked turn | homologous HL_5TBW_007 NA | |
| HL_7QWR_008 | 1/5/289:298 | No text annotation | homologous HL_5TBW_008 NA | |
| HL_7QWR_009 | 1/5/314:323 | Pseudoknot geometry | homologous HL_5TBW_009 NA | |
| HL_7QWR_010 | 1/5/368:373 | GNRA | homologous HL_5TBW_010 NA | |
| HL_7QWR_011 | 1/5/393:398 | GNRA | homologous HL_5TBW_011 NA | |
| HL_7QWR_012 | 1/5/500:654 | No text annotation | ||
| HL_7QWR_013 | 1/5/988:1065 | No text annotation | ||
| HL_7QWR_014 | 1/5/1178:1183 | GNRA | geometric HL_4V9F_009 HL_37824.8 | |
| HL_7QWR_015 | 1/5/1317:1326 | T-loop with 2 stacked bulged bases | geometric HL_5TBW_014 NA | |
| HL_7QWR_016 | 1/5/1364:1373 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_7QWR_017 | 1/5/1389:1394 | GNRA | geometric HL_5TBW_016 NA | |
| HL_7QWR_018 | 1/5/1406:1411 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_7QWR_019 | 1/5/1436:1448 | No text annotation | ||
| HL_7QWR_020 | 1/5/1479:1486 | UNCG variation | geometric HL_6VMY_004 HL_53890.2 | |
| HL_7QWR_021 | 1/5/1561:1566 | GNRA | geometric HL_4V9F_040 HL_37824.8 | |
| HL_7QWR_022 | 1/5/1593:1602 | No text annotation | geometric HL_8C3A_020 NA | |
| HL_7QWR_023 | 1/5/1627:1635 | No text annotation | geometric HL_5TBW_021 NA | |
| HL_7QWR_024 | 1/5/1675:1680 | No text annotation | geometric HL_2Y8W_001 HL_81100.2 | |
| HL_7QWR_025 | 1/5/1763:1769 | No text annotation | geometric HL_4V88_198 NA | |
| HL_7QWR_026 | 1/5/1814:1823 | No text annotation | ||
| HL_7QWR_027 | 1/5/1864:1870 | GNRA | geometric HL_5BTM_001 HL_37824.8 | |
| HL_7QWR_028 | 1/5/1886:1893 | No text annotation | geometric HL_1WZ2_007 HL_75660.5 | |
| HL_7QWR_029 | 1/5/1955:2028 | No text annotation | ||
| HL_7QWR_030 | 1/5/2087:2270 | No text annotation | ||
| HL_7QWR_031 | 1/5/2317:2322 | GNRA | geometric HL_2Z75_004 HL_37824.8 | |
| HL_7QWR_032 | 1/5/2376:2384 | T-loop with 2 stacked bulged bases | geometric HL_5TBW_031 NA | |
| HL_7QWR_033 | 1/5/2420:2426 | Pseudoknot geometry with 3' bulge | geometric HL_5J7L_170 HL_57176.2 | |
| HL_7QWR_034 | 1/5/2458:2463 | No text annotation | geometric HL_5J7L_143 HL_75660.5 | |
| HL_7QWR_035 | 1/5/2487:2491 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_7QWR_036 | 1/5/2523:2532 | No text annotation | geometric HL_5TBW_035 NA | |
| HL_7QWR_037 | 1/5/2561:2566 | GNRA | geometric HL_4Y1M_002 HL_37824.8 | |
| HL_7QWR_038 | 1/5/2578:2583 | GNRA | geometric HL_4WF9_059 HL_37824.8 | |
| HL_7QWR_039 | 1/5/2624:2632 | No text annotation | geometric HL_5TBW_037 NA | |
| HL_7QWR_040 | 1/5/2664:2670 | Other HL | geometric HL_4V9F_039 HL_77436.5 | |
| HL_7QWR_041 | 1/5/2705:2710 | No text annotation | geometric HL_2Y9H_003 HL_75660.5 | |
| HL_7QWR_042 | 1/5/2738:2742 | Mini UNCG | geometric HL_4V9F_041 HL_48778.2 | |
| HL_7QWR_043 | 1/5/2792:2799 | No text annotation | geometric HL_5TBW_041 NA | |
| HL_7QWR_044 | 1/5/2810:2816 | GNRA | geometric HL_1XJR_001 HL_37824.8 | |
| HL_7QWR_045 | 1/5/2872:2877 | UNCG | geometric HL_5Y85_004 HL_34617.5 | |
| HL_7QWR_078 | 1/5/2910:3584 | No text annotation | ||
| HL_7QWR_046 | 1/5/3614:3618 | No text annotation | geometric HL_6FQ3_001 HL_22135.1 | |
| HL_7QWR_047 | 1/5/3639:3649 | No text annotation | geometric HL_4WF9_043 HL_01962.2 | |
| HL_7QWR_048 | 1/5/3668:3674 | No text annotation | geometric HL_5U3G_001 HL_75660.5 | |
| HL_7QWR_049 | 1/5/3724:3729 | GNRA | geometric HL_3SUX_002 HL_37824.8 | |
| HL_7QWR_050 | 1/5/3757:3767 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_7QWR_051 | 1/5/3796:3804 | No text annotation | geometric HL_5TBW_050 NA | |
| HL_7QWR_052 | 1/5/3873:3882 | No text annotation | geometric HL_5TBW_051 NA | |
| HL_7QWR_053 | 1/5/3948:4065 | Mini UNCG | geometric HL_4YAZ_004 HL_48778.2 | |
| HL_7QWR_054 | 1/5/4139:4145 | No text annotation | geometric HL_4V88_197 NA | |
| HL_7QWR_055 | 1/5/4193:4201 | No text annotation | geometric HL_7A0S_052 HL_85367.2 | |
| HL_7QWR_056 | 1/5/4210:4222 | No text annotation | geometric HL_5TBW_055 NA | |
| HL_7QWR_057 | 1/5/4250:4258 | No text annotation | geometric HL_5TBW_056 NA | |
| HL_7QWR_058 | 1/5/4270:4277 | Pseudoknot geometry | geometric HL_7RQB_056 NA | |
| HL_7QWR_059 | 1/5/4301:4309 | No text annotation | geometric HL_5TBW_058 NA | |
| HL_7QWR_060 | 1/5/4321:4326 | GNRA | geometric HL_5TBW_059 NA | |
| HL_7QWR_061 | 1/5/4352:4362 | No text annotation | geometric HL_2ZZM_002 HL_13963.3 | |
| HL_7QWR_062 | 1/5/4417:4425 | No text annotation | geometric HL_4V9F_062 HL_32735.2 | |
| HL_7QWR_063 | 1/5/4474:4481 | No text annotation | geometric HL_5TBW_062 NA | |
| HL_7QWR_064 | 1/5/4497:4503 | No text annotation | geometric HL_5TBW_063 NA | |
| HL_7QWR_065 | 1/5/4540:4545 | GNRA | geometric HL_7RQB_063 NA | |
| HL_7QWR_066 | 1/5/4603:4608 | GNRA | geometric HL_5X2G_001 HL_37824.8 | |
| HL_7QWR_067 | 1/5/4646:4651 | Ribsomal LSU H95 | geometric HL_5J7L_198 HL_65794.5 | |
| HL_7QWR_068 | 1/5/4688:4702 | No text annotation | geometric HL_5TBW_067 NA | |
| HL_7QWR_069 | 1/5/4907:4914 | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
| HL_7QWR_070 | 1/5/4975:4983 | No text annotation | geometric HL_5J7L_201 HL_64690.6 | |
| HL_7QWR_071 | 1/5/5021:5028 | No text annotation | ||
| HL_7QWR_079 | 1/7/32:45 | No text annotation | homologous HL_8C3A_228 NA | |
| HL_7QWR_072 | 1/7/36:41 | No text annotation | homologous HL_5J7L_203 HL_47787.2 | |
| HL_7QWR_073 | 1/7/86:91 | GNRA | homologous HL_5TBW_186 NA | |
| HL_7QWR_074 | 1/8/55:62 | No text annotation | geometric HL_4P5J_004 HL_86769.4 | |
| HL_7QWR_075 | 1/8/68:90 | No text annotation | homologous HL_8C3A_075 NA | |
| HL_7QWR_076 | 1/8/107:112 | No text annotation | homologous HL_5TBW_075 NA | |
| HL_7QWR_077 | 1/8/121:129 | No text annotation | geometric HL_8C3A_054 NA |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7QWR_001 | 1/5/6:7, 1/8/149:151 | Single bulged C | geometric IL_7A0S_032 IL_61258.15 | |
| IL_7QWR_002 | 1/5/11:14, 1/8/143:145 | Isolated non-canonical cWW pair | geometric IL_5TBW_378 NA | |
| IL_7QWR_003 | 1/5/16:18, 1/8/139:141 | No text annotation | geometric IL_3ICQ_003 NA | |
| IL_7QWR_004 | 1/5/26:27, 1/5/55:57 | Single stack bend | homologous IL_5TBW_004 NA | |
| IL_7QWR_005 | 1/5/30:37, 1/5/44:52 | 9x8 Sarcin-Ricin; G-bulge | geometric IL_4WF9_008 IL_84694.2 | |
| IL_7QWR_006 | 1/5/81:88, 1/5/96:102 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_006 NA | |
| IL_7QWR_007 | 1/5/118:121, 1/5/152:153 | Major groove intercalation | geometric IL_1U9S_003 IL_82107.5 | |
| IL_7QWR_164 | 1/5/118:122, 1/5/147:153 | No text annotation | ||
| IL_7QWR_008 | 1/5/121:122, 1/5/147:152 | No text annotation | homologous IL_5TBW_007 NA | |
| IL_7QWR_009 | 1/5/125:126, 1/5/142:144 | Single bulged C | geometric IL_1S03_006 IL_61258.15 | |
| IL_7QWR_010 | 1/5/168:173, 1/5/263:267 | No text annotation | ||
| IL_7QWR_011 | 1/5/180:182, 1/5/255:256 | Single stack bend | geometric IL_4WF9_007 IL_90729.1 | |
| IL_7QWR_165 | 1/5/182:189, 1/5/252:255 | No text annotation | ||
| IL_7QWR_012 | 1/5/184:189, 1/5/252:253 | No text annotation | ||
| IL_7QWR_013 | 1/5/195:196, 1/5/244:246 | Single bulged C | geometric IL_4WF9_035 IL_61258.15 | |
| IL_7QWR_014 | 1/5/199:201, 1/5/214:215 | Single bulged U | homologous IL_5TBW_012 NA | |
| IL_7QWR_015 | 1/5/339:342, 1/8/32:33 | Minor groove platform | geometric IL_7RQB_073 NA | |
| IL_7QWR_016 | 1/5/348:350, 1/8/25:26 | Single bulged A | homologous IL_8C3A_014 NA | |
| IL_7QWR_017 | 1/5/387:390, 1/5/401:414 | No text annotation | geometric IL_5TBW_014 NA | |
| IL_7QWR_018 | 1/5/415:421, 1/8/13:19 | Triple sheared with non-canonical cWW | geometric IL_5TBW_015 NA | |
| IL_7QWR_019 | 1/5/443:445, 1/5/1303:1304 | Single stack bend | geometric IL_5J7L_249 IL_90729.1 | |
| IL_7QWR_166 | 1/5/443:446, 1/5/1300:1304 | No text annotation | geometric IL_7MLW_007 IL_99358.1 | |
| IL_7QWR_020 | 1/5/445:446, 1/5/1300:1303 | No text annotation | ||
| IL_7QWR_021 | 1/5/459:460, 1/5/695:697 | No text annotation | ||
| IL_7QWR_167 | 1/5/462:472, 1/5/682:693 | No text annotation | ||
| IL_7QWR_022 | 1/5/482:486, 1/5/670:672 | Isolated non-canonical cWW pair | geometric IL_3TD0_005 IL_57744.1 | |
| IL_7QWR_023 | 1/5/488:490, 1/5/664:668 | Decoding loop related | geometric IL_3C3Z_002 IL_31737.3 | |
| IL_7QWR_024 | 1/5/490:493, 1/5/661:664 | No text annotation | ||
| IL_7QWR_025 | 1/5/495:496, 1/5/657:659 | Single stack bend | geometric IL_5J7L_032 IL_26793.1 | |
| IL_7QWR_026 | 1/5/497:499, 1/5/655:656 | Multiple bulged bases | geometric IL_1R3E_001 IL_84476.1 | |
| IL_7QWR_027 | 1/5/708:709, 1/5/1287:1289 | Single bulged G | geometric IL_4LFB_036 IL_00225.14 | |
| IL_7QWR_028 | 1/5/722:724, 1/5/942:946 | No text annotation | ||
| IL_7QWR_029 | 1/5/726:731, 1/5/938:940 | No text annotation | ||
| IL_7QWR_168 | 1/5/726:735, 1/5/928:940 | No text annotation | ||
| IL_7QWR_030 | 1/5/731:735, 1/5/928:938 | No text annotation | ||
| IL_7QWR_031 | 1/5/735:737, 1/5/927:928 | No text annotation | ||
| IL_7QWR_032 | 1/5/740:742, 1/5/922:924 | Isolated non-canonical cWW pair | geometric IL_4YHW_001 IL_87907.2 | |
| IL_7QWR_178 | 1/5/745:752, 1/5/911:919 | No text annotation | ||
| IL_7QWR_034 | 1/5/1073:1074, 1/5/1236:1239 | Minor groove platform | geometric IL_7RQB_073 NA | |
| IL_7QWR_035 | 1/5/1074:1077, 1/5/1234:1236 | No text annotation | geometric IL_4V84_070 NA | |
| IL_7QWR_036 | 1/5/1077:1079, 1/5/1221:1234 | No text annotation | ||
| IL_7QWR_037 | 1/5/1081:1082, 1/5/1217:1219 | No text annotation | ||
| IL_7QWR_038 | 1/5/1082:1085, 1/5/1212:1217 | Tandem non-canonical cWW pairs | geometric IL_7VYX_002 IL_85033.2 | |
| IL_7QWR_039 | 1/5/1086:1087, 1/5/1209:1211 | Single bulged C | geometric IL_3W3S_001 IL_61258.15 | |
| IL_7QWR_040 | 1/5/1097:1098, 1/5/1197:1199 | Single stack bend | geometric IL_4V9F_081 IL_26793.1 | |
| IL_7QWR_041 | 1/5/1173:1175, 1/5/1186:1188 | Isolated near basepair | geometric IL_3NJ7_003 IL_42997.3 | |
| IL_7QWR_042 | 1/5/1357:1360, 1/5/1378:1382 | No text annotation | ||
| IL_7QWR_043 | 1/5/1360:1361, 1/5/1376:1378 | No text annotation | ||
| IL_7QWR_044 | 1/5/1425:1429, 1/5/1455:1460 | Triple sheared related | geometric IL_4V9F_018 IL_97631.1 | |
| IL_7QWR_045 | 1/5/1431:1434, 1/5/1450:1453 | Double sheared | geometric IL_4XWF_001 IL_09705.15 | |
| IL_7QWR_046 | 1/5/1467:1468, 1/5/1496:1498 | Single bulged A | geometric IL_5TBW_024 NA | |
| IL_7QWR_047 | 1/5/1474:1476, 1/5/1489:1490 | Single base bend | geometric IL_5IBB_340 IL_90729.1 | |
| IL_7QWR_048 | 1/5/1520:1522, 1/5/1655:1657 | Isolated non-canonical cWW pair | geometric IL_5TBW_027 NA | |
| IL_7QWR_049 | 1/5/1522:1526, 1/5/1648:1655 | tHW-tHW cross-strand stack | geometric IL_5TBW_028 NA | |
| IL_7QWR_050 | 1/5/1550:1551, 1/5/1576:1578 | Single bulged G | geometric IL_4V9F_026 IL_00225.14 | |
| IL_7QWR_051 | 1/5/1551:1555, 1/5/1572:1576 | Triple sheared | geometric IL_4V9F_027 IL_50730.2 | |
| IL_7QWR_052 | 1/5/1586:1589, 1/5/1605:1607 | Major groove platform with extra cWW | geometric IL_4V9F_028 IL_51387.3 | |
| IL_7QWR_053 | 1/5/1590:1592, 1/5/1603:1604 | Single bulged U | geometric IL_5TBW_032 NA | |
| IL_7QWR_054 | 1/5/1624:1626, 1/5/1636:1640 | Multiple bulged bases | geometric IL_5TBW_033 NA | |
| IL_7QWR_055 | 1/5/1671:1673, 1/5/1682:1684 | Isolated non-canonical cWW pair | geometric IL_5TBW_034 NA | |
| IL_7QWR_056 | 1/5/1686:1688, 1/5/1848:1851 | No text annotation | ||
| IL_7QWR_057 | 1/5/1694:1725, 1/5/1837:1842 | No text annotation | ||
| IL_7QWR_058 | 1/5/1732:1737, 1/5/1792:1797 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_7A0S_027 NA | |
| IL_7QWR_059 | 1/5/1737:1738, 1/5/1790:1792 | Minor groove platform | geometric IL_6DLR_003 IL_51454.3 | |
| IL_7QWR_060 | 1/5/1739:1744, 1/5/1786:1789 | C-loop | geometric IL_5TBW_040 NA | |
| IL_7QWR_061 | 1/5/1746:1749, 1/5/1781:1784 | Tandem non-canonical cWW pairs | geometric IL_5TBW_041 NA | |
| IL_7QWR_062 | 1/5/1749:1751, 1/5/1779:1781 | Isolated non-canonical cWW pair | geometric IL_5TBW_042 NA | |
| IL_7QWR_063 | 1/5/1753:1756, 1/5/1775:1777 | Not an internal loop | geometric IL_5VCI_005 NA | |
| IL_7QWR_170 | 1/5/1753:1758, 1/5/1774:1777 | No text annotation | ||
| IL_7QWR_064 | 1/5/1756:1758, 1/5/1774:1775 | Single stack bend | geometric IL_4V83_236 IL_90729.1 | |
| IL_7QWR_065 | 1/5/1758:1763, 1/5/1769:1774 | No text annotation | ||
| IL_7QWR_066 | 1/5/1858:1860, 1/5/1874:1876 | Isolated non-canonical cWW pair | geometric IL_5TBW_046 NA | |
| IL_7QWR_067 | 1/5/1905:1909, 1/5/2067:2071 | UAA/GAN | geometric IL_5TBW_048 NA | |
| IL_7QWR_068 | 1/5/1911:1918, 1/5/2064:2065 | SSU/LSU pseudoknot | geometric IL_7RQB_037 NA | |
| IL_7QWR_069 | 1/5/1918:1920, 1/5/2063:2064 | No text annotation | ||
| IL_7QWR_070 | 1/5/1920:1922, 1/5/2062:2063 | No text annotation | ||
| IL_7QWR_071 | 1/5/1926:1933, 1/5/2053:2058 | No text annotation | geometric IL_5TBW_051 NA | |
| IL_7QWR_072 | 1/5/1933:1944, 1/5/2038:2053 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_7QWR_073 | 1/5/1946:1948, 1/5/2035:2036 | Single bulged U | geometric IL_4V9F_107 IL_89505.4 | |
| IL_7QWR_074 | 1/5/2083:2085, 1/5/2272:2273 | No text annotation | ||
| IL_7QWR_075 | 1/5/2290:2292, 1/5/2342:2345 | Isolated cWS basepair | geometric IL_5TBW_057 NA | |
| IL_7QWR_076 | 1/5/2299:2301, 1/5/2334:2335 | Single bulged A | geometric IL_3OXE_001 IL_31462.7 | |
| IL_7QWR_077 | 1/5/2302:2309, 1/5/2329:2333 | Kink-turn | geometric IL_4V9F_048 IL_70923.9 | |
| IL_7QWR_078 | 1/5/2312:2314, 1/5/2325:2326 | Single bulged A | geometric IL_7RQB_033 NA | |
| IL_7QWR_079 | 1/5/2358:2364, 1/5/3858:3863 | 7x6 Sarcin-Ricin; G-bulge | geometric IL_5TBW_061 NA | |
| IL_7QWR_080 | 1/5/2415:2419, 1/5/2427:2429 | C-loop | geometric IL_7A0S_047 IL_83150.2 | |
| IL_7QWR_081 | 1/5/2446:2450, 1/5/2509:2514 | UAA/GAN | geometric IL_5TBW_063 NA | |
| IL_7QWR_082 | 1/5/2477:2479, 1/5/2499:2500 | Minor groove platform | geometric IL_4LFB_004 IL_51454.3 | |
| IL_7QWR_083 | 1/5/2542:2547, 1/5/2772:2774 | Isolated non-canonical cWW pair | geometric IL_5TBW_145 NA | |
| IL_7QWR_084 | 1/5/2589:2593, 1/5/2752:2756 | Triple sheared | geometric IL_7RQB_075 NA | |
| IL_7QWR_085 | 1/5/2613:2614, 1/5/2724:2726 | Single bulged A | geometric IL_7A0S_012 IL_31462.7 | |
| IL_7QWR_086 | 1/5/2614:2615, 1/5/2722:2724 | Single stack bend | geometric IL_5J7L_249 IL_90729.1 | |
| IL_7QWR_087 | 1/5/2646:2648, 1/5/2685:2688 | Decoding loop related | geometric IL_2O3X_003 IL_31737.3 | |
| IL_7QWR_088 | 1/5/2651:2653, 1/5/2681:2682 | Single bulged G | geometric IL_2IZN_001 IL_00225.14 | |
| IL_7QWR_089 | 1/5/2656:2662, 1/5/2672:2678 | Kink-turn | geometric IL_5TBW_073 NA | |
| IL_7QWR_090 | 1/5/2704:2705, 1/5/2710:2712 | No text annotation | ||
| IL_7QWR_091 | 1/5/2832:2838, 1/5/3850:3853 | No text annotation | geometric IL_5TBW_074 NA | |
| IL_7QWR_092 | 1/5/2844:2846, 1/5/3842:3844 | Isolated tWW turn | geometric IL_4V9F_060 IL_67095.2 | |
| IL_7QWR_093 | 1/5/2847:2850, 1/5/3840:3841 | Major groove platform; stack outside cWW | geometric IL_7RQB_066 NA | |
| IL_7QWR_171 | 1/5/2847:2855, 1/5/3837:3841 | No text annotation | geometric IL_8C3A_484 NA | |
| IL_7QWR_094 | 1/5/2850:2855, 1/5/3837:3840 | Intercalated tWH | geometric IL_5TBW_077 NA | |
| IL_7QWR_095 | 1/5/2867:2872, 1/5/2877:2883 | tSH-tSH-tHH-tHS | geometric IL_5TBW_078 NA | |
| IL_7QWR_096 | 1/5/2889:2891, 1/5/3610:3612 | Isolated non-canonical cWW pair | geometric IL_4LFB_061 NA | |
| IL_7QWR_097 | 1/5/2896:2897, 1/5/3602:3605 | No text annotation | geometric IL_8C3A_086 NA | |
| IL_7QWR_098 | 1/5/2901:2905, 1/5/3590:3598 | No text annotation | ||
| IL_7QWR_099 | 1/5/2905:2906, 1/5/3588:3590 | Single stack bend | geometric IL_7A0S_054 IL_26793.1 | |
| IL_7QWR_100 | 1/5/3632:3633, 1/5/3827:3829 | Single bulged A | geometric IL_4V9F_064 IL_31462.7 | |
| IL_7QWR_101 | 1/5/3660:3665, 1/5/3677:3684 | Kink-turn related | geometric IL_5TBW_083 NA | |
| IL_7QWR_102 | 1/5/3700:3703, 1/5/3749:3750 | Major groove intercalation | geometric IL_5TBW_084 NA | |
| IL_7QWR_103 | 1/5/3704:3705, 1/5/3745:3748 | Multiple bulged bases | geometric IL_3MXH_004 IL_82107.5 | |
| IL_7QWR_104 | 1/5/3708:3710, 1/5/3741:3742 | Single stack bend | geometric IL_5J7L_032 IL_26793.1 | |
| IL_7QWR_105 | 1/5/3710:3714, 1/5/3739:3741 | No text annotation | geometric IL_8C3A_092 NA | |
| IL_7QWR_106 | 1/5/3715:3721, 1/5/3732:3738 | No text annotation | geometric IL_5TBW_088 NA | |
| IL_7QWR_107 | 1/5/3780:3781, 1/5/3811:3814 | Bulged stacked bases | geometric IL_5TBW_089 NA | |
| IL_7QWR_108 | 1/5/3781:3792, 1/5/3808:3811 | No text annotation | geometric IL_5TBW_090 NA | |
| IL_7QWR_109 | 1/5/3895:3898, 1/5/4563:4565 | Major groove platform with extra pair | geometric IL_5TBW_091 NA | |
| IL_7QWR_110 | 1/5/3900:3902, 1/5/4558:4561 | Major groove platform with intercalation | geometric IL_5TBW_092 NA | |
| IL_7QWR_111 | 1/5/3913:3915, 1/5/4388:4389 | Single bulged U | geometric IL_5TBW_093 NA | |
| IL_7QWR_112 | 1/5/3916:3917, 1/5/4384:4387 | Minor groove platform | geometric IL_5TBW_094 NA | |
| IL_7QWR_113 | 1/5/3927:3929, 1/5/4181:4184 | Isolated tHS basepair with bulges | geometric IL_5TBW_095 NA | |
| IL_7QWR_114 | 1/5/4082:4088, 1/5/4161:4164 | No text annotation | geometric IL_5TBW_096 NA | |
| IL_7QWR_172 | 1/5/4090:4092, 1/5/4158:4159 | Single stack bend | geometric IL_7A0S_054 IL_26793.1 | |
| IL_7QWR_115 | 1/5/4095:4097, 1/5/4112:4113 | Single stack bend | geometric IL_7RQB_058 NA | |
| IL_7QWR_116 | 1/5/4191:4192, 1/5/4202:4204 | Single bulged A | geometric IL_4WF9_098 IL_31462.7 | |
| IL_7QWR_117 | 1/5/4243:4245, 1/5/4263:4267 | Isolated tHS basepair with bulges | geometric IL_7RQB_082 NA | |
| IL_7QWR_118 | 1/5/4291:4293, 1/5/4317:4318 | Single bulged A | geometric IL_5WWT_001 IL_31462.7 | |
| IL_7QWR_119 | 1/5/4295:4298, 1/5/4312:4315 | Tandem non-canonical cWW pairs | geometric IL_1MFQ_004 IL_85033.2 | |
| IL_7QWR_120 | 1/5/4347:4350, 1/5/4364:4365 | Single stack bend | geometric IL_5J7L_032 IL_26793.1 | |
| IL_7QWR_121 | 1/5/4400:4401, 1/5/4442:4444 | Major groove platform | geometric IL_5TBW_102 NA | |
| IL_7QWR_173 | 1/5/4400:4403, 1/5/4440:4444 | No text annotation | geometric IL_8C3A_111 NA | |
| IL_7QWR_122 | 1/5/4401:4403, 1/5/4440:4442 | No text annotation | geometric IL_7RQB_017 NA | |
| IL_7QWR_123 | 1/5/4403:4405, 1/5/4439:4440 | Major groove platform | geometric IL_5TBW_104 NA | |
| IL_7QWR_179 | 1/5/4405:4407, 1/5/4435:4439 | No text annotation | geometric IL_8P9A_332 IL_51387.3 | |
| IL_7QWR_125 | 1/5/4412:4416, 1/5/4426:4430 | Triple sheared | geometric IL_5TBW_106 NA | |
| IL_7QWR_126 | 1/5/4453:4454, 1/5/4526:4528 | Major groove platform | geometric IL_5TBW_107 NA | |
| IL_7QWR_127 | 1/5/4456:4458, 1/5/4520:4524 | Isolated non-canonical cWW with bulges | geometric IL_5TBW_108 NA | |
| IL_7QWR_128 | 1/5/4458:4459, 1/5/4517:4520 | Multiple bulged bases | geometric IL_5TBW_109 NA | |
| IL_7QWR_129 | 1/5/4466:4468, 1/5/4489:4491 | No text annotation | geometric IL_4KR9_001 NA | |
| IL_7QWR_174 | 1/5/4466:4470, 1/5/4485:4491 | No text annotation | ||
| IL_7QWR_130 | 1/5/4468:4470, 1/5/4485:4489 | No text annotation | ||
| IL_7QWR_131 | 1/5/4495:4497, 1/5/4503:4505 | Isolated non-canonical cWW pair | geometric IL_5TBW_112 NA | |
| IL_7QWR_132 | 1/5/4537:4538, 1/5/4547:4549 | Single bulged A | geometric IL_1U9S_001 IL_31462.7 | |
| IL_7QWR_133 | 1/5/4580:4582, 1/5/4721:4723 | No text annotation | geometric IL_3ICQ_003 NA | |
| IL_7QWR_134 | 1/5/4582:4585, 1/5/4717:4721 | Double sheared | geometric IL_5AOX_003 IL_09705.15 | |
| IL_7QWR_135 | 1/5/4590:4592, 1/5/4618:4620 | Isolated non-canonical cWW pair | geometric IL_2O3V_001 IL_28037.2 | |
| IL_7QWR_136 | 1/5/4596:4603, 1/5/4608:4614 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5TBW_116 NA | |
| IL_7QWR_137 | 1/5/4624:4629, 1/5/4669:4673 | No text annotation | ||
| IL_7QWR_138 | 1/5/4632:4637, 1/5/4662:4666 | UAA/GAN related | geometric IL_5TBW_118 NA | |
| IL_7QWR_139 | 1/5/4638:4640, 1/5/4659:4661 | Isolated cWH basepair | geometric IL_3R1C_018 IL_10167.6 | |
| IL_7QWR_140 | 1/5/4641:4642, 1/5/4655:4658 | Multiple bulged bases | geometric IL_5J7L_349 IL_42626.2 | |
| IL_7QWR_141 | 1/5/4681:4685, 1/5/4705:4709 | UAA/GAN | geometric IL_4WF9_036 IL_38507.2 | |
| IL_7QWR_142 | 1/5/4739:4742, 1/5/4958:4960 | No text annotation | ||
| IL_7QWR_143 | 1/5/4743:4746, 1/5/4954:4957 | Tandem non-canonical cWW pairs | geometric IL_5TBW_100 NA | |
| IL_7QWR_144 | 1/5/4755:4766, 1/5/4868:4878 | No text annotation | ||
| IL_7QWR_176 | 1/5/4769:4772, 1/5/4863:4865 | Decoding loop related | geometric IL_2O3X_003 IL_31737.3 | |
| IL_7QWR_146 | 1/5/4885:4888, 1/5/4931:4934 | Tandem non-canonical cWW pairs | geometric IL_1MFQ_004 IL_85033.2 | |
| IL_7QWR_147 | 1/5/4891:4896, 1/5/4924:4928 | No text annotation | ||
| IL_7QWR_148 | 1/5/4899:4901, 1/5/4920:4921 | No text annotation | ||
| IL_7QWR_149 | 1/5/4972:4975, 1/5/4983:4986 | Tandem non-canonical cWW pairs | geometric IL_5TBW_129 NA | |
| IL_7QWR_180 | 1/5/4992:4994, 1/5/5057:5059 | Isolated non-canonical cWW pair | geometric IL_7QUA_003 IL_87907.2 | |
| IL_7QWR_151 | 1/5/4996:4997, 1/5/5053:5055 | Single bulged C | geometric IL_1KUQ_002 IL_61258.15 | |
| IL_7QWR_152 | 1/5/5000:5002, 1/5/5045:5050 | Isolated non-canonical cWW pair | geometric IL_5TBW_132 NA | |
| IL_7QWR_153 | 1/5/5003:5009, 1/5/5039:5044 | No text annotation | ||
| IL_7QWR_154 | 1/5/5012:5014, 1/5/5035:5036 | Single bulged C | geometric IL_4WF9_035 IL_61258.15 | |
| IL_7QWR_155 | 1/5/5014:5017, 1/5/5032:5035 | Double sheared; A in syn | geometric IL_5TBW_135 NA | |
| IL_7QWR_156 | 1/7/15:16, 1/7/62:64 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_7QWR_157 | 1/7/21:27, 1/7/52:57 | Minor groove platform related | homologous IL_5TBW_373 NA | |
| IL_7QWR_158 | 1/7/28:29, 1/7/48:51 | Major groove minor groove platform; mini C-loop | homologous IL_7RQB_113 NA | |
| IL_7QWR_159 | 1/7/32:36, 1/7/41:45 | Symmetric double minor groove platform | geometric IL_7RQB_114 NA | |
| IL_7QWR_160 | 1/7/71:78, 1/7/98:104 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7A0S_007 IL_04346.10 | |
| IL_7QWR_161 | 1/7/79:81, 1/7/95:97 | Isolated non-canonical cWW pair | geometric IL_4E48_001 IL_87907.2 | |
| IL_7QWR_162 | 1/7/82:85, 1/7/92:94 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA | |
| IL_7QWR_177 | 1/8/44:64, 1/8/95:99 | No text annotation | homologous IL_8C3A_150 NA | |
| IL_7QWR_163 | 1/8/64:66, 1/8/92:95 | Isolated non-canonical cWW pair | geometric IL_5TBW_145 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7QWR_033 | No text annotation | ||
| IL_7QWR_169 | No text annotation | ||
| IL_7QWR_124 | No text annotation | ||
| IL_7QWR_175 | No text annotation | ||
| IL_7QWR_145 | No text annotation | ||
| IL_7QWR_150 | Tandem non-canonical cWW pairs |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7QWR_001 | 1/5/112:116, 1/5/155:160, 1/5/275:278 | No text annotation | ||
| J3_7QWR_019 | 1/5/196:199, 1/5/215:228, 1/5/240:244 | No text annotation | ||
| J3_7QWR_020 | 1/5/351:367, 1/5/374:379, 1/8/21:24 | No text annotation | homologous J3_8P9A_045 J3_30040.2 | |
| J3_7QWR_002 | 1/5/380:387, 1/5/414:415, 1/8/19:20 | No text annotation | homologous J3_5TBW_002 NA | |
| J3_7QWR_028 | 1/5/380:390, 1/5/401:415, 1/8/19:20 | No text annotation | homologous J3_8CRE_006 J3_92134.2 | |
| J3_7QWR_003 | 1/5/448:455, 1/5/701:704, 1/5/1293:1298 | No text annotation | ||
| J3_7QWR_004 | 1/5/711:713, 1/5/955:976, 1/5/1278:1285 | No text annotation | ||
| J3_7QWR_005 | 1/5/980:983, 1/5/1070:1073, 1/5/1239:1274 | No text annotation | ||
| J3_7QWR_006 | 1/5/1531:1537, 1/5/1622:1624, 1/5/1640:1643 | No text annotation | geometric J3_8C3A_003 NA | |
| J3_7QWR_007 | 1/5/1545:1548, 1/5/1580:1584, 1/5/1609:1614 | No text annotation | geometric J3_5TBW_005 NA | |
| J3_7QWR_008 | 1/5/1726:1727, 1/5/1802:1806, 1/5/1832:1836 | No text annotation | ||
| J3_7QWR_009 | 1/5/2393:2399, 1/5/2805:2807, 1/5/2819:2822 | No text annotation | geometric J3_8C3A_006 NA | |
| J3_7QWR_010 | 1/5/2402:2405, 1/5/2785:2791, 1/5/2800:2802 | No text annotation | geometric J3_8C3A_007 NA | |
| J3_7QWR_011 | 1/5/2440:2445, 1/5/2515:2519, 1/5/2536:2537 | No text annotation | geometric J3_8C3A_052 NA | |
| J3_7QWR_023 | 1/5/2451:2456, 1/5/2465:2476, 1/5/2501:2508 | No text annotation | ||
| J3_7QWR_024 | 1/5/2598:2602, 1/5/2737:2738, 1/5/2742:2747 | No text annotation | geometric J3_5TBW_066 NA | |
| J3_7QWR_012 | 1/5/3937:3939, 1/5/4074:4078, 1/5/4168:4173 | No text annotation | geometric J3_8VTW_006 NA | |
| J3_7QWR_025 | 1/5/4092:4094, 1/5/4114:4129, 1/5/4155:4158 | No text annotation | ||
| J3_7QWR_026 | 1/5/4228:4230, 1/5/4331:4342, 1/5/4370:4375 | No text annotation | ||
| J3_7QWR_014 | 1/5/4241:4243, 1/5/4267:4269, 1/5/4278:4283 | No text annotation | geometric J3_7A0S_010 J3_61124.2 | |
| J3_7QWR_015 | 1/5/4463:4466, 1/5/4491:4493, 1/5/4507:4513 | No text annotation | geometric J3_7A0S_011 J3_32601.5 | |
| J3_7QWR_027 | 1/5/4748:4754, 1/5/4879:4884, 1/5/4935:4952 | No text annotation | ||
| J3_7QWR_016 | 1/5/4970:4972, 1/5/4986:4991, 1/5/5060:5063 | No text annotation | ||
| J3_7QWR_017 | 1/7/9:14, 1/7/65:66, 1/7/109:110 | No text annotation | homologous J3_5TBW_045 NA | |
| J3_7QWR_018 | 1/8/44:55, 1/8/62:64, 1/8/95:99 | No text annotation | geometric J3_4WF9_001 J3_47707.1 | |
| J4_7QWR_001 | 1/5/111:112, 1/5/278:283, 1/5/304:310, 1/5/327:330 | No text annotation | ||
| J4_7QWR_002 | 1/5/196:199, 1/5/215:222, 1/5/226:228, 1/5/240:244 | No text annotation | ||
| J4_7QWR_003 | 1/5/2365:2371, 1/5/2389:2391, 1/5/2824:2829, 1/5/3856:3857 | No text annotation | ||
| J4_7QWR_004 | 1/5/2406:2410, 1/5/2434:2439, 1/5/2538:2539, 1/5/2777:2784 | No text annotation | ||
| J4_7QWR_005 | 1/5/2549:2555, 1/5/2572:2576, 1/5/2585:2589, 1/5/2756:2770 | No text annotation | ||
| J4_7QWR_006 | 1/5/2618:2619, 1/5/2637:2642, 1/5/2692:2698, 1/5/2718:2719 | No text annotation | ||
| J4_7QWR_007 | 1/5/3634:3638, 1/5/3650:3654, 1/5/3690:3694, 1/5/3821:3826 | No text annotation | ||
| J4_7QWR_008 | 1/5/3696:3698, 1/5/3752:3754, 1/5/3770:3780, 1/5/3814:3819 | No text annotation | ||
| J4_7QWR_009 | 1/5/4231:4235, 1/5/4289:4291, 1/5/4318:4319, 1/5/4328:4330 | No text annotation | ||
| J4_7QWR_010 | 1/5/4587:4590, 1/5/4620:4621, 1/5/4676:4678, 1/5/4712:4715 | No text annotation | ||
| J5_7QWR_001 | 1/5/19:21, 1/8/35:42, 1/8/101:106, 1/8/113:114, 1/8/136:138 | No text annotation | homologous J5_8P9A_010 J5_01737.2 | |
| J5_7QWR_002 | 1/5/1335:1340, 1/5/1516:1519, 1/5/1658:1661, 1/5/2288:2290, 1/5/2345:2351 | No text annotation | ||
| J5_7QWR_003 | 1/5/2855:2863, 1/5/2887:2888, 1/5/3613:3614, 1/5/3618:3626, 1/5/3835:3837 | No text annotation | ||
| J5_7QWR_004 | 1/5/3903:3910, 1/5/4392:4400, 1/5/4444:4453, 1/5/4528:4534, 1/5/4552:4557 | No text annotation | ||
| J5_7QWR_005 | 1/5/3920:3923, 1/5/4188:4191, 1/5/4204:4205, 1/5/4227:4228, 1/5/4375:4381 | No text annotation | ||
| J6_7QWR_001 | 1/5/21:26, 1/5/57:67, 1/5/74:78, 1/5/105:109, 1/5/332:339, 1/8/33:35 | No text annotation | ||
| J6_7QWR_002 | 1/5/1352:1355, 1/5/1384:1388, 1/5/1395:1399, 1/5/1418:1421, 1/5/1464:1466, 1/5/1499:1504 | No text annotation | ||
| J6_7QWR_003 | 1/5/3920:3923, 1/5/4188:4191, 1/5/4204:4205, 1/5/4227:4230, 1/5/4331:4342, 1/5/4370:4381 | No text annotation | ||
| J7_7QWR_001 | 1/5/1666:1671, 1/5/1684:1685, 1/5/1852:1855, 1/5/1879:1884, 1/5/1895:1899, 1/5/2077:2078, 1/5/2278:2283 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7QWR_021 | No text annotation | ||
| J3_7QWR_022 | No text annotation | ||
| J3_7QWR_013 | No text annotation |
Coloring options: