HL_7QWR_033

3D structure

PDB id

7QWR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-nascent chain containing an ER signal sequence in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

7QWR|1|5|G|2421, 7QWR|1|5|U|2425

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QWR_033 not in the Motif Atlas

Geometric match to HL_5J7L_170

Geometric discrepancy: 0.1931

The information below is about HL_5J7L_170

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

7QWR|1|5|A|2420
7QWR|1|5|G|2421
7QWR|1|5|C|2422
7QWR|1|5|A|2423
7QWR|1|5|G|2424
7QWR|1|5|U|2425
7QWR|1|5|U|2426

Current chains

Chain 5

28S rRNA

Nearby chains

Chain P

60S ribosomal protein L17

Chain R

60S ribosomal protein L19