HL_7QWR_058

3D structure

PDB id

7QWR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-nascent chain containing an ER signal sequence in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAGAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QWR_058 not in the Motif Atlas

Geometric match to HL_7RQB_056

Geometric discrepancy: 0.1969

The information below is about HL_7RQB_056

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_12078.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

7QWR|1|5|C|4270
7QWR|1|5|A|4271
7QWR|1|5|G|4272
7QWR|1|5|A|4273
7QWR|1|5|A|4274
7QWR|1|5|G|4275
7QWR|1|5|G|4276
7QWR|1|5|G|4277

Current chains

Chain 5

28S rRNA

Nearby chains

Chain I

60S ribosomal protein L10

Chain T

60S ribosomal protein L21