HL_7QWS_005

3D structure

PDB id

7QWS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome translating beta-tubulin in complex with TTC5 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

7QWS|1|5|C|210

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QWS_005 not in the Motif Atlas

Homologous match to HL_5TBW_005

Geometric discrepancy: 0.2834

The information below is about HL_5TBW_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

7QWS|1|5|U|204
7QWS|1|5|C|205
7QWS|1|5|U|206
7QWS|1|5|G|207
7QWS|1|5|A|208
7QWS|1|5|U|209
7QWS|1|5|C|210
7QWS|1|5|G|211

Current chains

Chain 5

28S rRNA

Nearby chains

Chain K

Tetratricopeptide repeat protein 5

Chain Y

Ribosomal protein L26

Chain e

Ribosomal protein L32