7QWS Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7QWS_001 | No text annotation | ||
| HL_7QWS_002 | No text annotation | ||
| HL_7QWS_003 | No text annotation | ||
| HL_7QWS_004 | No text annotation | ||
| HL_7QWS_005 | T-loop with 2 stacked bulged bases | ||
| HL_7QWS_006 | No text annotation | ||
| HL_7QWS_007 | T-loop with unstacked turn | ||
| HL_7QWS_008 | No text annotation | ||
| HL_7QWS_009 | Pseudoknot geometry | ||
| HL_7QWS_010 | GNRA | ||
| HL_7QWS_011 | GNRA | ||
| HL_7QWS_012 | No text annotation | ||
| HL_7QWS_013 | No text annotation | ||
| HL_7QWS_080 | No text annotation | ||
| HL_7QWS_014 | GNRA | ||
| HL_7QWS_015 | T-loop with 2 stacked bulged bases | ||
| HL_7QWS_016 | Externally structured | ||
| HL_7QWS_017 | GNRA | ||
| HL_7QWS_018 | Mini UNCG with extended bulge | ||
| HL_7QWS_019 | No text annotation | ||
| HL_7QWS_020 | UNCG variation | ||
| HL_7QWS_021 | GNRA | ||
| HL_7QWS_022 | No text annotation | ||
| HL_7QWS_023 | No text annotation | ||
| HL_7QWS_024 | No text annotation | ||
| HL_7QWS_025 | No text annotation | ||
| HL_7QWS_026 | No text annotation | ||
| HL_7QWS_027 | GNRA | ||
| HL_7QWS_028 | No text annotation | ||
| HL_7QWS_029 | No text annotation | ||
| HL_7QWS_030 | No text annotation | ||
| HL_7QWS_031 | GNRA | ||
| HL_7QWS_032 | T-loop with 2 bulged bases not stacked | ||
| HL_7QWS_033 | Pseudoknot geometry with 3' bulge | ||
| HL_7QWS_034 | No text annotation | ||
| HL_7QWS_035 | Externally structured | ||
| HL_7QWS_036 | No text annotation | ||
| HL_7QWS_037 | GNRA | ||
| HL_7QWS_038 | GNRA | ||
| HL_7QWS_039 | No text annotation | ||
| HL_7QWS_040 | No text annotation | ||
| HL_7QWS_041 | No text annotation | ||
| HL_7QWS_042 | Mini UNCG | ||
| HL_7QWS_043 | No text annotation | ||
| HL_7QWS_044 | GNRA | ||
| HL_7QWS_045 | UNCG | ||
| HL_7QWS_078 | No text annotation | ||
| HL_7QWS_046 | No text annotation | ||
| HL_7QWS_047 | No text annotation | ||
| HL_7QWS_048 | No text annotation | ||
| HL_7QWS_049 | GNRA | ||
| HL_7QWS_050 | No text annotation | ||
| HL_7QWS_051 | No text annotation | ||
| HL_7QWS_052 | No text annotation | ||
| HL_7QWS_053 | Mini UNCG | ||
| HL_7QWS_054 | No text annotation | ||
| HL_7QWS_055 | No text annotation | ||
| HL_7QWS_056 | No text annotation | ||
| HL_7QWS_057 | No text annotation | ||
| HL_7QWS_058 | Pseudoknot geometry | ||
| HL_7QWS_059 | No text annotation | ||
| HL_7QWS_060 | GNRA | ||
| HL_7QWS_061 | No text annotation | ||
| HL_7QWS_062 | No text annotation | ||
| HL_7QWS_063 | No text annotation | ||
| HL_7QWS_064 | No text annotation | ||
| HL_7QWS_065 | GNRA | ||
| HL_7QWS_066 | GNRA | ||
| HL_7QWS_067 | Ribsomal LSU H95 | ||
| HL_7QWS_068 | No text annotation | ||
| HL_7QWS_069 | No text annotation | ||
| HL_7QWS_070 | No text annotation | ||
| HL_7QWS_071 | Externally structured | ||
| HL_7QWS_079 | No text annotation | ||
| HL_7QWS_072 | No text annotation | ||
| HL_7QWS_073 | GNRA | ||
| HL_7QWS_074 | No text annotation | ||
| HL_7QWS_075 | No text annotation | ||
| HL_7QWS_076 | No text annotation | ||
| HL_7QWS_077 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7QWS_001 | Tandem non-canonical cWW pairs | ||
| IL_7QWS_002 | Isolated non-canonical cWW pair | ||
| IL_7QWS_164 | Tandem non-canonical cWW pairs | ||
| IL_7QWS_003 | Isolated non-canonical cWW pair | ||
| IL_7QWS_004 | Single stack bend | ||
| IL_7QWS_005 | 9x8 Sarcin-Ricin; G-bulge | ||
| IL_7QWS_006 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_7QWS_007 | Multiple bulged bases | ||
| IL_7QWS_165 | No text annotation | ||
| IL_7QWS_008 | No text annotation | ||
| IL_7QWS_009 | Single bulged C | ||
| IL_7QWS_010 | No text annotation | ||
| IL_7QWS_011 | Single stack bend | ||
| IL_7QWS_166 | No text annotation | ||
| IL_7QWS_012 | No text annotation | ||
| IL_7QWS_013 | Single bulged C | ||
| IL_7QWS_014 | Single bulged U | ||
| IL_7QWS_015 | Minor groove platform | ||
| IL_7QWS_016 | Single bulged A | ||
| IL_7QWS_017 | No text annotation | ||
| IL_7QWS_018 | Triple sheared with non-canonical cWW | ||
| IL_7QWS_019 | No text annotation | ||
| IL_7QWS_020 | Single stack bend | ||
| IL_7QWS_021 | No text annotation | ||
| IL_7QWS_167 | No text annotation | ||
| IL_7QWS_022 | No text annotation | ||
| IL_7QWS_023 | No text annotation | ||
| IL_7QWS_024 | No text annotation | ||
| IL_7QWS_025 | Single stack bend | ||
| IL_7QWS_026 | No text annotation | ||
| IL_7QWS_027 | Single bulged G | ||
| IL_7QWS_028 | No text annotation | ||
| IL_7QWS_029 | No text annotation | ||
| IL_7QWS_030 | No text annotation | ||
| IL_7QWS_031 | No text annotation | ||
| IL_7QWS_032 | Isolated non-canonical cWW pair | ||
| IL_7QWS_033 | No text annotation | ||
| IL_7QWS_168 | No text annotation | ||
| IL_7QWS_034 | Minor groove platform, major groove intercalation | ||
| IL_7QWS_035 | No text annotation | ||
| IL_7QWS_178 | No text annotation | ||
| IL_7QWS_036 | No text annotation | ||
| IL_7QWS_037 | No text annotation | ||
| IL_7QWS_038 | No text annotation | ||
| IL_7QWS_039 | Single bulged C | ||
| IL_7QWS_040 | Single stack bend | ||
| IL_7QWS_041 | Isolated near basepair | ||
| IL_7QWS_042 | No text annotation | ||
| IL_7QWS_043 | No text annotation | ||
| IL_7QWS_044 | Triple sheared related | ||
| IL_7QWS_045 | Double sheared | ||
| IL_7QWS_046 | Single bulged A | ||
| IL_7QWS_047 | Single stack bend | ||
| IL_7QWS_048 | Isolated non-canonical cWW pair | ||
| IL_7QWS_049 | tHW-tHW cross-strand stack | ||
| IL_7QWS_050 | Single bulged G | ||
| IL_7QWS_051 | Triple sheared | ||
| IL_7QWS_052 | Major groove platform with extra cWW | ||
| IL_7QWS_053 | Single bulged U | ||
| IL_7QWS_054 | Multiple bulged bases | ||
| IL_7QWS_055 | Isolated non-canonical cWW pair | ||
| IL_7QWS_056 | No text annotation | ||
| IL_7QWS_057 | No text annotation | ||
| IL_7QWS_058 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_7QWS_059 | Minor groove platform | ||
| IL_7QWS_060 | C-loop | ||
| IL_7QWS_061 | Tandem non-canonical cWW pairs | ||
| IL_7QWS_062 | Isolated non-canonical cWW pair | ||
| IL_7QWS_063 | No text annotation | ||
| IL_7QWS_064 | Single stack bend | ||
| IL_7QWS_065 | No text annotation | ||
| IL_7QWS_066 | Isolated non-canonical cWW pair | ||
| IL_7QWS_067 | UAA/GAN | ||
| IL_7QWS_068 | SSU/LSU pseudoknot | ||
| IL_7QWS_069 | No text annotation | ||
| IL_7QWS_070 | Single bulged C | ||
| IL_7QWS_071 | No text annotation | ||
| IL_7QWS_072 | No text annotation | ||
| IL_7QWS_073 | Single bulged U | ||
| IL_7QWS_074 | No text annotation | ||
| IL_7QWS_075 | Isolated cWS basepair | ||
| IL_7QWS_076 | Single bulged A | ||
| IL_7QWS_077 | Kink-turn | ||
| IL_7QWS_078 | Single bulged A | ||
| IL_7QWS_079 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_7QWS_080 | C-loop | ||
| IL_7QWS_081 | UAA/GAN | ||
| IL_7QWS_082 | Minor groove platform | ||
| IL_7QWS_083 | Isolated non-canonical cWW pair | ||
| IL_7QWS_084 | Double sheared with non-canonical cWW | ||
| IL_7QWS_085 | Single bulged A | ||
| IL_7QWS_086 | Single stack bend | ||
| IL_7QWS_087 | Decoding loop related | ||
| IL_7QWS_088 | Single bulged G | ||
| IL_7QWS_089 | Kink-turn | ||
| IL_7QWS_090 | No text annotation | ||
| IL_7QWS_091 | No text annotation | ||
| IL_7QWS_092 | Isolated tWW turn | ||
| IL_7QWS_093 | Major groove platform; stack outside cWW | ||
| IL_7QWS_169 | No text annotation | ||
| IL_7QWS_094 | Intercalated tWH | ||
| IL_7QWS_095 | tSH-tSH-tHH-tHS | ||
| IL_7QWS_096 | Isolated non-canonical cWW pair | ||
| IL_7QWS_097 | No text annotation | ||
| IL_7QWS_098 | No text annotation | ||
| IL_7QWS_099 | Single stack bend | ||
| IL_7QWS_100 | Single bulged A | ||
| IL_7QWS_101 | Kink-turn related | ||
| IL_7QWS_102 | Major groove intercalation | ||
| IL_7QWS_103 | Multiple bulged bases | ||
| IL_7QWS_104 | Single stack bend | ||
| IL_7QWS_170 | Multiple bulged bases | ||
| IL_7QWS_105 | No text annotation | ||
| IL_7QWS_106 | No text annotation | ||
| IL_7QWS_107 | Bulged stacked bases | ||
| IL_7QWS_108 | No text annotation | ||
| IL_7QWS_109 | Major groove platform with extra pair | ||
| IL_7QWS_110 | Major groove platform with intercalation | ||
| IL_7QWS_111 | Single bulged U | ||
| IL_7QWS_112 | Minor groove platform | ||
| IL_7QWS_113 | Isolated tHS basepair with bulges | ||
| IL_7QWS_114 | No text annotation | ||
| IL_7QWS_115 | Single stack bend | ||
| IL_7QWS_116 | Single stack bend | ||
| IL_7QWS_117 | Single bulged A | ||
| IL_7QWS_118 | Isolated tHS basepair with bulges | ||
| IL_7QWS_119 | Single bulged A | ||
| IL_7QWS_120 | Tandem non-canonical cWW pairs | ||
| IL_7QWS_121 | Single stack bend | ||
| IL_7QWS_171 | No text annotation | ||
| IL_7QWS_122 | Major groove platform | ||
| IL_7QWS_123 | Isolated non-canonical cWW pair | ||
| IL_7QWS_124 | Major groove platform | ||
| IL_7QWS_125 | No text annotation | ||
| IL_7QWS_126 | Triple sheared | ||
| IL_7QWS_127 | Isolated non-canonical cWW with bulges | ||
| IL_7QWS_128 | Multiple bulged bases | ||
| IL_7QWS_129 | Isolated non-canonical cWW pair | ||
| IL_7QWS_172 | No text annotation | ||
| IL_7QWS_130 | No text annotation | ||
| IL_7QWS_131 | Isolated non-canonical cWW pair | ||
| IL_7QWS_132 | Single bulged A | ||
| IL_7QWS_133 | Isolated cWH basepair | ||
| IL_7QWS_134 | Double sheared | ||
| IL_7QWS_135 | Isolated non-canonical cWW pair | ||
| IL_7QWS_136 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_7QWS_137 | No text annotation | ||
| IL_7QWS_138 | UAA/GAN related | ||
| IL_7QWS_139 | Isolated non-canonical cWW pair | ||
| IL_7QWS_140 | Multiple bulged bases | ||
| IL_7QWS_141 | UAA/GAN | ||
| IL_7QWS_142 | No text annotation | ||
| IL_7QWS_173 | Single stack bend with SAM intercalation | ||
| IL_7QWS_174 | No text annotation | ||
| IL_7QWS_143 | Tandem non-canonical cWW pairs | ||
| IL_7QWS_144 | No text annotation | ||
| IL_7QWS_145 | Isolated tHS basepair with bulges | ||
| IL_7QWS_175 | Tandem non-canonical cWW pairs | ||
| IL_7QWS_146 | Partly complementary | ||
| IL_7QWS_147 | No text annotation | ||
| IL_7QWS_148 | No text annotation | ||
| IL_7QWS_149 | Tandem non-canonical cWW pairs | ||
| IL_7QWS_176 | Tandem non-canonical cWW pairs | ||
| IL_7QWS_150 | Isolated non-canonical cWW pair | ||
| IL_7QWS_151 | Single bulged C | ||
| IL_7QWS_152 | Isolated non-canonical cWW pair | ||
| IL_7QWS_153 | No text annotation | ||
| IL_7QWS_154 | Single bulged C | ||
| IL_7QWS_155 | Double sheared; A in syn | ||
| IL_7QWS_156 | Single bulged A | ||
| IL_7QWS_157 | Minor groove platform related | ||
| IL_7QWS_158 | Major groove minor groove platform; mini C-loop | ||
| IL_7QWS_159 | Symmetric double minor groove platform | ||
| IL_7QWS_160 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_7QWS_161 | Isolated non-canonical cWW pair | ||
| IL_7QWS_162 | Isolated non-canonical cWW pair | ||
| IL_7QWS_177 | No text annotation | ||
| IL_7QWS_163 | Isolated non-canonical cWW pair |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7QWS_001 | No text annotation | ||
| J3_7QWS_002 | No text annotation | ||
| J3_7QWS_019 | No text annotation | ||
| J3_7QWS_003 | No text annotation | ||
| J3_7QWS_004 | No text annotation | ||
| J3_7QWS_005 | No text annotation | ||
| J3_7QWS_006 | No text annotation | ||
| J3_7QWS_007 | No text annotation | ||
| J3_7QWS_008 | No text annotation | ||
| J3_7QWS_009 | No text annotation | ||
| J3_7QWS_010 | No text annotation | ||
| J3_7QWS_011 | No text annotation | ||
| J3_7QWS_020 | No text annotation | ||
| J3_7QWS_021 | No text annotation | ||
| J3_7QWS_012 | No text annotation | ||
| J3_7QWS_013 | No text annotation | ||
| J3_7QWS_022 | No text annotation | ||
| J3_7QWS_014 | No text annotation | ||
| J3_7QWS_015 | No text annotation | ||
| J3_7QWS_023 | No text annotation | ||
| J3_7QWS_016 | No text annotation | ||
| J3_7QWS_024 | No text annotation | ||
| J3_7QWS_017 | No text annotation | ||
| J3_7QWS_018 | No text annotation | ||
| J4_7QWS_001 | No text annotation | ||
| J4_7QWS_002 | No text annotation | ||
| J4_7QWS_003 | No text annotation | ||
| J4_7QWS_004 | No text annotation | ||
| J4_7QWS_005 | No text annotation | ||
| J4_7QWS_006 | No text annotation | ||
| J4_7QWS_007 | No text annotation | ||
| J4_7QWS_008 | No text annotation | ||
| J4_7QWS_009 | No text annotation | ||
| J4_7QWS_010 | No text annotation | ||
| J4_7QWS_011 | No text annotation | ||
| J4_7QWS_012 | No text annotation | ||
| J5_7QWS_001 | No text annotation | ||
| J5_7QWS_002 | No text annotation | ||
| J5_7QWS_003 | No text annotation | ||
| J5_7QWS_004 | No text annotation | ||
| J5_7QWS_005 | No text annotation | ||
| J6_7QWS_001 | No text annotation | ||
| J6_7QWS_002 | No text annotation | ||
| J6_7QWS_003 | No text annotation | ||
| J7_7QWS_001 | No text annotation |
Coloring options: