RNA 3D Hub //

7QWS Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7QWS_0011/5/37:44No text annotation
homologous
HL_5TBW_001
NA
HL_7QWS_0021/5/68:73No text annotation
homologous
HL_5TBW_002
NA
HL_7QWS_0031/5/89:95No text annotation
homologous
HL_5TBW_003
NA
HL_7QWS_0041/5/131:137No text annotation
geometric
HL_2Y8W_001
HL_81100.2
HL_7QWS_0051/5/204:211T-loop with 2 stacked bulged bases
homologous
HL_5TBW_005
NA
HL_7QWS_0061/5/222:226No text annotation
homologous
HL_5TBW_006
NA
HL_7QWS_0071/5/230:238T-loop with unstacked turn
homologous
HL_5TBW_007
NA
HL_7QWS_0081/5/289:298No text annotation
homologous
HL_5TBW_008
NA
HL_7QWS_0091/5/314:323Pseudoknot geometry
homologous
HL_5TBW_009
NA
HL_7QWS_0101/5/368:373GNRA
homologous
HL_5TBW_010
NA
HL_7QWS_0111/5/393:398GNRA
homologous
HL_5TBW_011
NA
HL_7QWS_0121/5/500:654No text annotation
HL_7QWS_0801/5/989:1064No text annotation
HL_7QWS_0141/5/1178:1183GNRA
geometric
HL_4V9F_009
HL_37824.8
HL_7QWS_0151/5/1317:1326T-loop with 2 stacked bulged bases
geometric
HL_5TBW_014
NA
HL_7QWS_0161/5/1364:1373Externally structured
geometric
HL_8C3A_022
NA
HL_7QWS_0171/5/1389:1394GNRA
geometric
HL_5TBW_016
NA
HL_7QWS_0181/5/1406:1411Mini UNCG with extended bulge
geometric
HL_2B3J_003
HL_48778.2
HL_7QWS_0191/5/1436:1448No text annotation
geometric
HL_7JRS_002
HL_67407.5
HL_7QWS_0201/5/1479:1486UNCG variation
geometric
HL_6VMY_004
HL_53890.2
HL_7QWS_0211/5/1561:1566GNRA
geometric
HL_4LFB_003
HL_37824.8
HL_7QWS_0221/5/1593:1602No text annotation
geometric
HL_5TBW_020
NA
HL_7QWS_0231/5/1627:1635No text annotation
geometric
HL_5TBW_021
NA
HL_7QWS_0241/5/1675:1680No text annotation
geometric
HL_2Y8W_001
HL_81100.2
HL_7QWS_0251/5/1763:1769No text annotation
geometric
HL_4O26_001
HL_35941.1
HL_7QWS_0261/5/1814:1823No text annotation
HL_7QWS_0271/5/1864:1870GNRA
geometric
HL_5TBW_025
NA
HL_7QWS_0281/5/1886:1893No text annotation
geometric
HL_1WZ2_007
HL_75660.5
HL_7QWS_0291/5/1955:2028No text annotation
HL_7QWS_0301/5/2087:2270No text annotation
HL_7QWS_0311/5/2317:2322GNRA
geometric
HL_7RQB_063
NA
HL_7QWS_0321/5/2376:2384T-loop with 2 bulged bases not stacked
geometric
HL_4FRN_005
HL_01609.3
HL_7QWS_0331/5/2420:2426Pseudoknot geometry with 3' bulge
geometric
HL_5J7L_170
HL_57176.2
HL_7QWS_0341/5/2458:2463No text annotation
geometric
HL_5J7L_143
HL_75660.5
HL_7QWS_0351/5/2487:2491Externally structured
geometric
HL_8C3A_022
NA
HL_7QWS_0361/5/2523:2532No text annotation
geometric
HL_5TBW_035
NA
HL_7QWS_0371/5/2561:2566GNRA
geometric
HL_4Y1M_002
HL_37824.8
HL_7QWS_0381/5/2578:2583GNRA
geometric
HL_4WF9_059
HL_37824.8
HL_7QWS_0391/5/2624:2632No text annotation
geometric
HL_5TBW_037
NA
HL_7QWS_0401/5/2664:2670No text annotation
geometric
HL_5U3G_001
HL_75660.5
HL_7QWS_0411/5/2705:2710No text annotation
geometric
HL_2Y9H_003
HL_75660.5
HL_7QWS_0421/5/2738:2742Mini UNCG
geometric
HL_4V88_192
NA
HL_7QWS_0431/5/2792:2799No text annotation
geometric
HL_5TBW_041
NA
HL_7QWS_0441/5/2810:2816GNRA
geometric
HL_5TBW_042
NA
HL_7QWS_0451/5/2872:2877UNCG
geometric
HL_5Y85_004
HL_34617.5
HL_7QWS_0781/5/2910:3584No text annotation
HL_7QWS_0461/5/3614:3618No text annotation
geometric
HL_5TBW_045
NA
HL_7QWS_0471/5/3639:3649No text annotation
geometric
HL_4WF9_043
HL_01962.2
HL_7QWS_0481/5/3668:3674No text annotation
geometric
HL_5U3G_001
HL_75660.5
HL_7QWS_0491/5/3724:3729GNRA
geometric
HL_6CB3_006
HL_37824.8
HL_7QWS_0501/5/3757:3767No text annotation
geometric
HL_5TBW_049
NA
HL_7QWS_0511/5/3796:3804No text annotation
geometric
HL_5TBW_050
NA
HL_7QWS_0521/5/3873:3882No text annotation
geometric
HL_5TBW_051
NA
HL_7QWS_0531/5/3948:4065Mini UNCG
geometric
HL_4YAZ_004
HL_48778.2
HL_7QWS_0541/5/4139:4145No text annotation
geometric
HL_7KI3_001
HL_75660.5
HL_7QWS_0551/5/4193:4201No text annotation
geometric
HL_4V9F_055
HL_85367.2
HL_7QWS_0561/5/4210:4222No text annotation
geometric
HL_4WF9_050
HL_91939.2
HL_7QWS_0571/5/4250:4258No text annotation
geometric
HL_5TBW_056
NA
HL_7QWS_0581/5/4270:4277Pseudoknot geometry
geometric
HL_4GXY_003
HL_65794.5
HL_7QWS_0591/5/4301:4309No text annotation
geometric
HL_5TBW_058
NA
HL_7QWS_0601/5/4321:4326GNRA
geometric
HL_3NPQ_001
HL_37824.8
HL_7QWS_0611/5/4352:4362No text annotation
geometric
HL_2ZZM_002
HL_13963.3
HL_7QWS_0621/5/4417:4425No text annotation
geometric
HL_4V9F_062
HL_32735.2
HL_7QWS_0631/5/4474:4481No text annotation
geometric
HL_5TBW_062
NA
HL_7QWS_0641/5/4497:4503No text annotation
geometric
HL_5TBW_063
NA
HL_7QWS_0651/5/4540:4545GNRA
geometric
HL_7RQB_063
NA
HL_7QWS_0661/5/4603:4608GNRA
geometric
HL_3E5C_001
HL_37824.8
HL_7QWS_0671/5/4646:4651Ribsomal LSU H95
geometric
HL_5J7L_198
HL_65794.5
HL_7QWS_0681/5/4688:4702No text annotation
geometric
HL_5J7L_199
HL_74055.2
HL_7QWS_0691/5/4907:4914No text annotation
geometric
HL_8C3A_054
NA
HL_7QWS_0701/5/4975:4983No text annotation
geometric
HL_5TBW_070
NA
HL_7QWS_0711/5/5021:5028Externally structured
geometric
HL_8C3A_022
NA
HL_7QWS_0791/7/32:45No text annotation
homologous
HL_9DFE_067
HL_97756.2
HL_7QWS_0721/7/36:41No text annotation
homologous
HL_5TBW_185
NA
HL_7QWS_0731/7/86:91GNRA
homologous
HL_5TBW_186
NA
HL_7QWS_0741/8/55:62No text annotation
geometric
HL_4P5J_004
HL_86769.4
HL_7QWS_0751/8/68:90No text annotation
homologous
HL_8C3A_075
NA
HL_7QWS_0761/8/107:112No text annotation
homologous
HL_5TBW_075
NA
HL_7QWS_0771/8/121:129No text annotation
geometric
HL_361D_002
HL_13963.3

Problematic loops

#loop idProblemSequence
HL_7QWS_013No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7QWS_0011/5/4:7,
1/8/149:153		Tandem non-canonical cWW pairs
geometric
IL_1L9A_005
IL_85033.2
IL_7QWS_0021/5/11:14,
1/8/143:145		Isolated non-canonical cWW pair
geometric
IL_5TBW_378
NA
IL_7QWS_0031/5/16:18,
1/8/139:141		Isolated non-canonical cWW pair
geometric
IL_1Y27_001
IL_87907.2
IL_7QWS_0041/5/26:27,
1/5/55:57		Single stack bend
homologous
IL_5TBW_004
NA
IL_7QWS_0051/5/30:37,
1/5/44:52		9x8 Sarcin-Ricin; G-bulge
geometric
IL_4WF9_008
IL_84694.2
IL_7QWS_0061/5/81:88,
1/5/96:102		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_006
NA
IL_7QWS_0071/5/118:121,
1/5/152:153		Multiple bulged bases
geometric
IL_5XWP_001
IL_82107.5
IL_7QWS_1651/5/118:122,
1/5/147:153		No text annotation
IL_7QWS_0081/5/121:122,
1/5/147:152		No text annotation
geometric
IL_5TBW_007
NA
IL_7QWS_0091/5/125:126,
1/5/142:144		Single bulged C
geometric
IL_1S03_006
IL_61258.15
IL_7QWS_0101/5/168:173,
1/5/263:267		No text annotation
IL_7QWS_0111/5/180:182,
1/5/255:256		Single stack bend
geometric
IL_4V9F_081
IL_26793.1
IL_7QWS_1661/5/182:189,
1/5/252:255		No text annotation
IL_7QWS_0121/5/184:189,
1/5/252:253		No text annotation
IL_7QWS_0131/5/195:196,
1/5/244:246		Single bulged C
geometric
IL_7KGA_004
IL_61258.15
IL_7QWS_0141/5/199:201,
1/5/214:215		Single bulged U
homologous
IL_5TBW_012
NA
IL_7QWS_0151/5/339:342,
1/8/32:33		Minor groove platform
geometric
IL_7RQB_073
NA
IL_7QWS_0161/5/348:350,
1/8/25:26		Single bulged A
homologous
IL_8C3A_014
NA
IL_7QWS_0171/5/387:390,
1/5/401:414		No text annotation
geometric
IL_5TBW_014
NA
IL_7QWS_0181/5/415:421,
1/8/13:19		Triple sheared with non-canonical cWW
homologous
IL_5TBW_015
NA
IL_7QWS_0191/5/443:446,
1/5/1300:1304		No text annotation
geometric
IL_7MLW_007
IL_99358.1
IL_7QWS_0201/5/448:450,
1/5/1297:1298		Single stack bend
geometric
IL_7RQB_091
NA
IL_7QWS_0211/5/459:460,
1/5/695:697		No text annotation
IL_7QWS_1671/5/462:472,
1/5/682:693		No text annotation
IL_7QWS_0221/5/482:486,
1/5/670:672		No text annotation
IL_7QWS_0231/5/488:490,
1/5/664:668		No text annotation
IL_7QWS_0241/5/490:493,
1/5/661:664		No text annotation
IL_7QWS_0251/5/495:496,
1/5/657:659		Single stack bend
geometric
IL_4V9F_081
IL_26793.1
IL_7QWS_0261/5/497:499,
1/5/655:656		No text annotation
IL_7QWS_0271/5/708:709,
1/5/1287:1289		Single bulged G
geometric
IL_4LFB_036
IL_00225.14
IL_7QWS_0281/5/722:724,
1/5/942:946		No text annotation
IL_7QWS_0291/5/726:731,
1/5/938:940		No text annotation
IL_7QWS_0301/5/731:735,
1/5/928:938		No text annotation
IL_7QWS_0311/5/735:737,
1/5/927:928		No text annotation
IL_7QWS_0321/5/740:742,
1/5/922:924		Isolated non-canonical cWW pair
geometric
IL_4YHW_001
IL_87907.2
IL_7QWS_0331/5/745:753,
1/5/910:919		No text annotation
IL_7QWS_0341/5/1073:1074,
1/5/1236:1239		Minor groove platform, major groove intercalation
geometric
IL_5J7L_314
IL_95583.2
IL_7QWS_0351/5/1074:1077,
1/5/1234:1236		No text annotation
geometric
IL_4V84_070
NA
IL_7QWS_1781/5/1077:1079,
1/5/1221:1234		No text annotation
IL_7QWS_0371/5/1081:1082,
1/5/1217:1219		No text annotation
IL_7QWS_0381/5/1082:1085,
1/5/1212:1217		No text annotation
IL_7QWS_0391/5/1086:1087,
1/5/1209:1211		Single bulged C
geometric
IL_3W3S_001
IL_61258.15
IL_7QWS_0401/5/1097:1098,
1/5/1197:1199		Single stack bend
geometric
IL_4V9F_081
IL_26793.1
IL_7QWS_0411/5/1173:1175,
1/5/1186:1188		Isolated near basepair
geometric
IL_3NJ7_003
IL_42997.3
IL_7QWS_0421/5/1357:1360,
1/5/1378:1382		No text annotation
IL_7QWS_0431/5/1360:1361,
1/5/1376:1378		No text annotation
IL_7QWS_0441/5/1425:1429,
1/5/1455:1460		Triple sheared related
geometric
IL_4V9F_018
IL_97631.1
IL_7QWS_0451/5/1431:1434,
1/5/1450:1453		Double sheared
geometric
IL_4XWF_001
IL_09705.15
IL_7QWS_0461/5/1467:1468,
1/5/1496:1498		Single bulged A
geometric
IL_5TBW_024
NA
IL_7QWS_0471/5/1474:1476,
1/5/1489:1490		Single stack bend
geometric
IL_7A0S_005
IL_90729.1
IL_7QWS_0481/5/1520:1522,
1/5/1655:1657		Isolated non-canonical cWW pair
geometric
IL_7A0S_014
IL_87907.2
IL_7QWS_0491/5/1522:1526,
1/5/1648:1655		tHW-tHW cross-strand stack
geometric
IL_5TBW_028
NA
IL_7QWS_0501/5/1550:1551,
1/5/1576:1578		Single bulged G
geometric
IL_4V9F_026
IL_00225.14
IL_7QWS_0511/5/1551:1555,
1/5/1572:1576		Triple sheared
geometric
IL_4V9F_027
IL_50730.2
IL_7QWS_0521/5/1586:1589,
1/5/1605:1607		Major groove platform with extra cWW
geometric
IL_5TBW_031
NA
IL_7QWS_0531/5/1590:1592,
1/5/1603:1604		Single bulged U
geometric
IL_5TBW_032
NA
IL_7QWS_0541/5/1624:1626,
1/5/1636:1640		Multiple bulged bases
geometric
IL_5TBW_033
NA
IL_7QWS_0551/5/1671:1673,
1/5/1682:1684		Isolated non-canonical cWW pair
geometric
IL_5TBW_034
NA
IL_7QWS_0561/5/1686:1688,
1/5/1848:1851		No text annotation
IL_7QWS_0571/5/1694:1725,
1/5/1837:1842		No text annotation
IL_7QWS_0581/5/1732:1737,
1/5/1792:1797		5x5 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_7A0S_027
NA
IL_7QWS_0591/5/1737:1738,
1/5/1790:1792		Minor groove platform
geometric
IL_6DLR_003
IL_51454.3
IL_7QWS_0601/5/1739:1744,
1/5/1786:1789		C-loop
geometric
IL_5TBW_040
NA
IL_7QWS_0611/5/1746:1749,
1/5/1781:1784		Tandem non-canonical cWW pairs
geometric
IL_5TBW_041
NA
IL_7QWS_0621/5/1749:1751,
1/5/1779:1781		Isolated non-canonical cWW pair
geometric
IL_5TBW_042
NA
IL_7QWS_0631/5/1753:1756,
1/5/1775:1777		No text annotation
IL_7QWS_0641/5/1756:1758,
1/5/1774:1775		Single stack bend
geometric
IL_4V83_236
IL_90729.1
IL_7QWS_0651/5/1759:1763,
1/5/1769:1773		No text annotation
IL_7QWS_0661/5/1858:1860,
1/5/1874:1876		Isolated non-canonical cWW pair
geometric
IL_5TBW_046
NA
IL_7QWS_0671/5/1905:1909,
1/5/2067:2071		UAA/GAN
geometric
IL_5TBW_048
NA
IL_7QWS_0681/5/1911:1918,
1/5/2064:2065		SSU/LSU pseudoknot
geometric
IL_7RQB_037
NA
IL_7QWS_0691/5/1918:1920,
1/5/2063:2064		No text annotation
IL_7QWS_0701/5/1920:1922,
1/5/2062:2063		Single bulged C
geometric
IL_3SNP_003
IL_61258.15
IL_7QWS_0711/5/1926:1933,
1/5/2053:2058		No text annotation
geometric
IL_5TBW_051
NA
IL_7QWS_0721/5/1933:1944,
1/5/2038:2053		No text annotation
geometric
IL_5TBW_052
NA
IL_7QWS_0731/5/1946:1948,
1/5/2035:2036		Single bulged U
geometric
IL_4V9F_107
IL_89505.4
IL_7QWS_0741/5/2083:2085,
1/5/2272:2273		No text annotation
IL_7QWS_0751/5/2290:2292,
1/5/2342:2345		Isolated cWS basepair
geometric
IL_5TBW_057
NA
IL_7QWS_0761/5/2299:2301,
1/5/2334:2335		Single bulged A
geometric
IL_3OXE_001
IL_31462.7
IL_7QWS_0771/5/2302:2309,
1/5/2329:2333		Kink-turn
geometric
IL_4V9F_048
IL_70923.9
IL_7QWS_0781/5/2312:2314,
1/5/2325:2326		Single bulged A
geometric
IL_5WWT_001
IL_31462.7
IL_7QWS_0791/5/2358:2364,
1/5/3858:3863		7x6 Sarcin-Ricin; G-bulge
geometric
IL_5TBW_061
NA
IL_7QWS_0801/5/2415:2419,
1/5/2427:2429		C-loop
geometric
IL_4MGN_001
IL_63596.11
IL_7QWS_0811/5/2446:2450,
1/5/2509:2514		UAA/GAN
geometric
IL_5TBW_063
NA
IL_7QWS_0821/5/2477:2479,
1/5/2499:2500		Minor groove platform
geometric
IL_4V88_388
NA
IL_7QWS_0831/5/2542:2547,
1/5/2772:2774		Isolated non-canonical cWW pair
geometric
IL_5TBW_145
NA
IL_7QWS_0841/5/2589:2593,
1/5/2752:2756		Double sheared with non-canonical cWW
geometric
IL_5J7L_338
IL_17948.2
IL_7QWS_0851/5/2613:2614,
1/5/2724:2726		Single bulged A
geometric
IL_7A0S_012
IL_31462.7
IL_7QWS_0861/5/2614:2615,
1/5/2722:2724		Single stack bend
geometric
IL_4WF9_007
IL_90729.1
IL_7QWS_0871/5/2646:2648,
1/5/2685:2688		Decoding loop related
geometric
IL_2O3X_003
IL_31737.3
IL_7QWS_0881/5/2651:2653,
1/5/2681:2682		Single bulged G
geometric
IL_2IZN_001
IL_00225.14
IL_7QWS_0891/5/2656:2662,
1/5/2672:2678		Kink-turn
geometric
IL_5TBW_073
NA
IL_7QWS_0901/5/2704:2705,
1/5/2710:2712		No text annotation
IL_7QWS_0911/5/2832:2838,
1/5/3850:3853		No text annotation
geometric
IL_5TBW_074
NA
IL_7QWS_0921/5/2844:2846,
1/5/3842:3844		Isolated tWW turn
geometric
IL_4V9F_060
IL_67095.2
IL_7QWS_0931/5/2847:2850,
1/5/3840:3841		Major groove platform; stack outside cWW
geometric
IL_7RQB_066
NA
IL_7QWS_1691/5/2847:2855,
1/5/3837:3841		No text annotation
geometric
IL_8C3A_484
NA
IL_7QWS_0941/5/2850:2855,
1/5/3837:3840		Intercalated tWH
geometric
IL_5TBW_077
NA
IL_7QWS_0951/5/2867:2872,
1/5/2877:2883		tSH-tSH-tHH-tHS
geometric
IL_5TBW_078
NA
IL_7QWS_0961/5/2889:2891,
1/5/3610:3612		Isolated non-canonical cWW pair
geometric
IL_4LFB_061
NA
IL_7QWS_0971/5/2896:2897,
1/5/3602:3605		No text annotation
geometric
IL_8C3A_086
NA
IL_7QWS_0981/5/2901:2905,
1/5/3590:3598		No text annotation
IL_7QWS_0991/5/2905:2906,
1/5/3588:3590		Single stack bend
geometric
IL_7KGA_006
IL_26793.1
IL_7QWS_1001/5/3632:3633,
1/5/3827:3829		Single bulged A
geometric
IL_4V9F_064
IL_31462.7
IL_7QWS_1011/5/3660:3665,
1/5/3677:3684		Kink-turn related
geometric
IL_5TBW_083
NA
IL_7QWS_1021/5/3700:3703,
1/5/3749:3750		Major groove intercalation
geometric
IL_5TBW_084
NA
IL_7QWS_1031/5/3704:3705,
1/5/3745:3748		Multiple bulged bases
geometric
IL_3MXH_004
IL_82107.5
IL_7QWS_1041/5/3708:3710,
1/5/3741:3742		Single stack bend
geometric
IL_5J7L_032
IL_26793.1
IL_7QWS_1701/5/3710:3713,
1/5/3740:3741		Multiple bulged bases
geometric
IL_5W1H_001
IL_82107.5
IL_7QWS_1061/5/3715:3721,
1/5/3732:3738		No text annotation
geometric
IL_5TBW_088
NA
IL_7QWS_1071/5/3780:3781,
1/5/3811:3814		Bulged stacked bases
geometric
IL_5TBW_089
NA
IL_7QWS_1081/5/3781:3792,
1/5/3808:3811		No text annotation
geometric
IL_5TBW_090
NA
IL_7QWS_1091/5/3895:3898,
1/5/4563:4565		Major groove platform with extra pair
geometric
IL_5TBW_091
NA
IL_7QWS_1101/5/3900:3902,
1/5/4558:4561		Major groove platform with intercalation
geometric
IL_5TBW_092
NA
IL_7QWS_1111/5/3913:3915,
1/5/4388:4389		Single bulged U
geometric
IL_5TBW_093
NA
IL_7QWS_1121/5/3916:3917,
1/5/4384:4387		Minor groove platform
geometric
IL_5TBW_094
NA
IL_7QWS_1131/5/3927:3929,
1/5/4181:4184		Isolated tHS basepair with bulges
geometric
IL_5J7L_325
IL_85599.2
IL_7QWS_1141/5/4082:4088,
1/5/4161:4164		No text annotation
geometric
IL_5TBW_096
NA
IL_7QWS_1151/5/4090:4092,
1/5/4158:4159		Single stack bend
geometric
IL_7A0S_054
IL_26793.1
IL_7QWS_1161/5/4095:4097,
1/5/4112:4113		Single stack bend
geometric
IL_7RQB_058
NA
IL_7QWS_1171/5/4191:4192,
1/5/4202:4204		Single bulged A
geometric
IL_4WF9_098
IL_31462.7
IL_7QWS_1181/5/4243:4245,
1/5/4263:4267		Isolated tHS basepair with bulges
geometric
IL_7RQB_082
NA
IL_7QWS_1191/5/4291:4293,
1/5/4317:4318		Single bulged A
geometric
IL_5WWT_001
IL_31462.7
IL_7QWS_1201/5/4295:4298,
1/5/4312:4315		Tandem non-canonical cWW pairs
geometric
IL_4V88_438
NA
IL_7QWS_1211/5/4347:4350,
1/5/4364:4365		Single stack bend
geometric
IL_5J7L_032
IL_26793.1
IL_7QWS_1221/5/4400:4401,
1/5/4442:4444		Major groove platform
geometric
IL_5TBW_102
NA
IL_7QWS_1231/5/4401:4403,
1/5/4440:4442		Isolated non-canonical cWW pair
geometric
IL_5TBW_046
NA
IL_7QWS_1241/5/4403:4405,
1/5/4439:4440		Major groove platform
geometric
IL_5TBW_104
NA
IL_7QWS_1251/5/4405:4408,
1/5/4434:4439		No text annotation
IL_7QWS_1261/5/4412:4416,
1/5/4426:4430		Triple sheared
geometric
IL_5TBW_106
NA
IL_7QWS_1271/5/4456:4458,
1/5/4520:4524		Isolated non-canonical cWW with bulges
geometric
IL_5TBW_108
NA
IL_7QWS_1281/5/4458:4459,
1/5/4517:4520		Multiple bulged bases
geometric
IL_5TBW_109
NA
IL_7QWS_1291/5/4466:4468,
1/5/4489:4491		Isolated non-canonical cWW pair
geometric
IL_4WF9_042
IL_87907.2
IL_7QWS_1721/5/4466:4470,
1/5/4485:4491		No text annotation
IL_7QWS_1301/5/4468:4470,
1/5/4485:4489		No text annotation
geometric
IL_3DD2_004
IL_55516.2
IL_7QWS_1311/5/4495:4497,
1/5/4503:4505		Isolated non-canonical cWW pair
geometric
IL_5TBW_112
NA
IL_7QWS_1321/5/4537:4538,
1/5/4547:4549		Single bulged A
geometric
IL_4V88_409
NA
IL_7QWS_1331/5/4580:4582,
1/5/4721:4723		Isolated cWH basepair
geometric
IL_3CZW_001
IL_10167.6
IL_7QWS_1341/5/4582:4585,
1/5/4717:4721		Double sheared
geometric
IL_5AOX_003
IL_09705.15
IL_7QWS_1351/5/4590:4592,
1/5/4618:4620		Isolated non-canonical cWW pair
geometric
IL_3GM7_004
IL_87907.2
IL_7QWS_1361/5/4596:4603,
1/5/4608:4614		8x7 Sarcin-Ricin; G-bulge
geometric
IL_5TBW_116
NA
IL_7QWS_1371/5/4624:4629,
1/5/4669:4673		No text annotation
IL_7QWS_1381/5/4632:4637,
1/5/4662:4666		UAA/GAN related
geometric
IL_5TBW_118
NA
IL_7QWS_1391/5/4638:4640,
1/5/4659:4661		Isolated non-canonical cWW pair
geometric
IL_5MWI_006
NA
IL_7QWS_1401/5/4641:4642,
1/5/4655:4658		Multiple bulged bases
geometric
IL_4WF9_103
IL_42626.2
IL_7QWS_1411/5/4681:4685,
1/5/4705:4709		UAA/GAN
geometric
IL_4WF9_036
IL_38507.2
IL_7QWS_1731/5/4740:4742,
1/5/4958:4959		Single stack bend with SAM intercalation
geometric
IL_6FZ0_001
IL_90729.1
IL_7QWS_1741/5/4742:4746,
1/5/4954:4958		No text annotation
IL_7QWS_1431/5/4743:4746,
1/5/4954:4957		Tandem non-canonical cWW pairs
geometric
IL_5TBW_100
NA
IL_7QWS_1441/5/4755:4766,
1/5/4868:4878		No text annotation
IL_7QWS_1451/5/4769:4772,
1/5/4863:4865		Isolated tHS basepair with bulges
geometric
IL_4V9F_076
IL_85599.2
IL_7QWS_1751/5/4885:4888,
1/5/4931:4934		Tandem non-canonical cWW pairs
geometric
IL_4EYA_010
IL_51479.1
IL_7QWS_1471/5/4891:4896,
1/5/4924:4928		No text annotation
IL_7QWS_1481/5/4899:4901,
1/5/4920:4921		No text annotation
IL_7QWS_1491/5/4972:4975,
1/5/4983:4986		Tandem non-canonical cWW pairs
geometric
IL_5TBW_129
NA
IL_7QWS_1501/5/4992:4994,
1/5/5057:5059		Isolated non-canonical cWW pair
geometric
IL_3D0U_006
IL_87907.2
IL_7QWS_1511/5/4996:4997,
1/5/5053:5055		Single bulged C
geometric
IL_1KUQ_002
IL_61258.15
IL_7QWS_1521/5/5000:5002,
1/5/5045:5050		Isolated non-canonical cWW pair
geometric
IL_5TBW_132
NA
IL_7QWS_1531/5/5003:5009,
1/5/5039:5044		No text annotation
IL_7QWS_1541/5/5012:5014,
1/5/5035:5036		Single bulged C
geometric
IL_4WF9_035
IL_61258.15
IL_7QWS_1551/5/5014:5017,
1/5/5032:5035		Double sheared; A in syn
geometric
IL_5TBW_135
NA
IL_7QWS_1561/7/15:16,
1/7/62:64		Single bulged A
homologous
IL_5TBW_372
NA
IL_7QWS_1571/7/21:27,
1/7/52:57		Minor groove platform related
homologous
IL_5TBW_373
NA
IL_7QWS_1581/7/28:29,
1/7/48:51		Major groove minor groove platform; mini C-loop
homologous
IL_7RQB_113
NA
IL_7QWS_1591/7/32:36,
1/7/41:45		Symmetric double minor groove platform
geometric
IL_7RQB_114
NA
IL_7QWS_1601/7/71:78,
1/7/98:104		8x7 Sarcin-Ricin; G-bulge
geometric
IL_5TBW_116
NA
IL_7QWS_1611/7/79:81,
1/7/95:97		Isolated non-canonical cWW pair
geometric
IL_4V88_470
NA
IL_7QWS_1621/7/82:85,
1/7/92:94		Isolated non-canonical cWW pair
homologous
IL_5TBW_378
NA
IL_7QWS_1771/8/44:64,
1/8/95:99		No text annotation
homologous
IL_8C3A_150
NA
IL_7QWS_1631/8/64:66,
1/8/92:95		Isolated non-canonical cWW pair
homologous
IL_5TBW_145
NA

Problematic loops

#loop idProblemSequence
IL_7QWS_164Tandem non-canonical cWW pairs
IL_7QWS_168No text annotation
IL_7QWS_036No text annotation
IL_7QWS_105No text annotation
IL_7QWS_171No text annotation
IL_7QWS_142No text annotation
IL_7QWS_146Partly complementary
IL_7QWS_176Tandem non-canonical cWW pairs

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7QWS_0011/5/112:116,
1/5/155:160,
1/5/275:278		No text annotation
J3_7QWS_0021/5/379:387,
1/5/414:415,
1/8/19:21		No text annotation
J3_7QWS_0191/5/448:455,
1/5/701:704,
1/5/1293:1298		No text annotation
J3_7QWS_0031/5/450:455,
1/5/701:704,
1/5/1293:1297		No text annotation
J3_7QWS_0041/5/711:713,
1/5/955:976,
1/5/1278:1285		No text annotation
J3_7QWS_0051/5/980:983,
1/5/1070:1073,
1/5/1239:1274		No text annotation
J3_7QWS_0061/5/1531:1537,
1/5/1622:1624,
1/5/1640:1643		No text annotation
geometric
J3_8C3A_003
NA
J3_7QWS_0071/5/1545:1548,
1/5/1580:1584,
1/5/1609:1614		No text annotation
geometric
J3_5TBW_005
NA
J3_7QWS_0081/5/1726:1727,
1/5/1802:1806,
1/5/1832:1836		No text annotation
J3_7QWS_0091/5/2393:2399,
1/5/2805:2807,
1/5/2819:2822		No text annotation
geometric
J3_8C3A_006
NA
J3_7QWS_0101/5/2402:2405,
1/5/2785:2791,
1/5/2800:2802		No text annotation
geometric
J3_8C3A_007
NA
J3_7QWS_0111/5/2440:2445,
1/5/2515:2519,
1/5/2536:2537		No text annotation
geometric
J3_8C3A_052
NA
J3_7QWS_0201/5/2451:2456,
1/5/2465:2476,
1/5/2501:2508		No text annotation
J3_7QWS_0211/5/2598:2602,
1/5/2737:2738,
1/5/2742:2747		No text annotation
geometric
J3_8C3A_055
NA
J3_7QWS_0121/5/3937:3939,
1/5/4074:4078,
1/5/4168:4173		No text annotation
geometric
J3_8VTW_006
NA
J3_7QWS_0131/5/4092:4094,
1/5/4114:4129,
1/5/4155:4158		No text annotation
J3_7QWS_0221/5/4228:4230,
1/5/4331:4342,
1/5/4370:4375		No text annotation
geometric
J3_4V9F_018
J3_44792.1
J3_7QWS_0141/5/4241:4243,
1/5/4267:4269,
1/5/4278:4283		No text annotation
geometric
J3_7A0S_010
J3_61124.2
J3_7QWS_0151/5/4463:4466,
1/5/4491:4493,
1/5/4507:4513		No text annotation
geometric
J3_7A0S_011
J3_32601.5
J3_7QWS_0231/5/4748:4754,
1/5/4879:4884,
1/5/4935:4952		No text annotation
J3_7QWS_0161/5/4970:4972,
1/5/4986:4991,
1/5/5060:5063		No text annotation
J3_7QWS_0241/7/9:14,
1/7/65:66,
1/7/109:110		No text annotation
homologous
J3_8P9A_066
J3_12003.2
J3_7QWS_0181/8/44:55,
1/8/62:64,
1/8/95:99		No text annotation
geometric
J3_4WF9_001
J3_47707.1
J4_7QWS_0011/5/111:112,
1/5/278:283,
1/5/304:310,
1/5/327:330		No text annotation
J4_7QWS_0021/5/196:199,
1/5/215:222,
1/5/226:228,
1/5/240:244		No text annotation
J4_7QWS_0031/5/351:367,
1/5/374:387,
1/5/414:415,
1/8/19:24		No text annotation
J4_7QWS_0041/5/351:367,
1/5/374:390,
1/5/401:415,
1/8/19:24		No text annotation
J4_7QWS_0051/5/2365:2371,
1/5/2389:2391,
1/5/2824:2829,
1/5/3856:3857		No text annotation
J4_7QWS_0061/5/2406:2410,
1/5/2434:2439,
1/5/2538:2539,
1/5/2777:2784		No text annotation
J4_7QWS_0071/5/2549:2555,
1/5/2572:2576,
1/5/2585:2589,
1/5/2756:2770		No text annotation
J4_7QWS_0081/5/2618:2619,
1/5/2637:2642,
1/5/2692:2698,
1/5/2718:2719		No text annotation
J4_7QWS_0091/5/3634:3638,
1/5/3650:3654,
1/5/3690:3694,
1/5/3821:3826		No text annotation
J4_7QWS_0101/5/3696:3698,
1/5/3752:3754,
1/5/3770:3780,
1/5/3814:3819		No text annotation
J4_7QWS_0111/5/4231:4235,
1/5/4289:4291,
1/5/4318:4319,
1/5/4328:4330		No text annotation
J4_7QWS_0121/5/4587:4590,
1/5/4620:4621,
1/5/4676:4678,
1/5/4712:4715		No text annotation
J5_7QWS_0011/5/19:21,
1/8/35:42,
1/8/101:106,
1/8/113:114,
1/8/136:138		No text annotation
homologous
J5_8P9A_010
J5_01737.2
J5_7QWS_0021/5/1335:1340,
1/5/1516:1519,
1/5/1658:1661,
1/5/2288:2290,
1/5/2345:2351		No text annotation
J5_7QWS_0031/5/2855:2863,
1/5/2887:2888,
1/5/3613:3614,
1/5/3618:3626,
1/5/3835:3837		No text annotation
J5_7QWS_0041/5/3903:3910,
1/5/4392:4400,
1/5/4444:4454,
1/5/4526:4534,
1/5/4552:4557		No text annotation
J5_7QWS_0051/5/3920:3923,
1/5/4188:4191,
1/5/4204:4205,
1/5/4227:4228,
1/5/4375:4381		No text annotation
J6_7QWS_0011/5/21:26,
1/5/57:67,
1/5/74:78,
1/5/105:109,
1/5/332:339,
1/8/33:35		No text annotation
J6_7QWS_0021/5/1352:1355,
1/5/1384:1388,
1/5/1395:1399,
1/5/1418:1421,
1/5/1464:1466,
1/5/1499:1504		No text annotation
J6_7QWS_0031/5/3920:3923,
1/5/4188:4191,
1/5/4204:4205,
1/5/4227:4230,
1/5/4331:4342,
1/5/4370:4381		No text annotation
J7_7QWS_0011/5/1666:1671,
1/5/1684:1685,
1/5/1852:1855,
1/5/1879:1884,
1/5/1895:1899,
1/5/2077:2078,
1/5/2278:2283		No text annotation

Problematic loops

#loop idProblemSequence
J3_7QWS_017No text annotation

Coloring options:
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