HL_7R4X_018

3D structure

PDB id

7R4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the human 40S ribosomal subunit - Full map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

GA(PSU)CAGAUACC

Length

11 nucleotides

Bulged bases

7R4X|1|2|C|1057, 7R4X|1|2|U|1061

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7R4X_018 not in the Motif Atlas

Homologous match to HL_4V88_208

Geometric discrepancy: 0.2571

The information below is about HL_4V88_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

7R4X|1|2|G|1054
7R4X|1|2|A|1055
7R4X|1|2|PSU|1056
7R4X|1|2|C|1057
7R4X|1|2|A|1058
7R4X|1|2|G|1059
7R4X|1|2|A|1060
7R4X|1|2|U|1061
7R4X|1|2|A|1062
7R4X|1|2|C|1063
7R4X|1|2|C|1064

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain O

40S ribosomal protein S14

Chain a

40S ribosomal protein S26