HL_7R7A_004

3D structure

PDB id

7R7A (explore in PDB, NAKB, or RNA 3D Hub)

Description

State E1 nucleolar 60S ribosome biogenesis intermediate - Composite model

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CUUCG

Length

5 nucleotides

Bulged bases

7R7A|1|1|U|133, 7R7A|1|1|C|135

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7R7A_004 not in the Motif Atlas

Homologous match to HL_8C3A_004

Geometric discrepancy: 0.0691

The information below is about HL_8C3A_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86929.1

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

7R7A|1|1|C|132
7R7A|1|1|U|133
7R7A|1|1|U|134
7R7A|1|1|C|135
7R7A|1|1|G|136

Current chains

Chain 1

25S rRNA

Nearby chains

Chain N

60S ribosomal protein L15-A

Chain h

60S ribosomal protein L35-A