HL_7R7A_018

3D structure

PDB id

7R7A (explore in PDB, NAKB, or RNA 3D Hub)

Description

State E1 nucleolar 60S ribosome biogenesis intermediate - Composite model

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

7R7A|1|1|C|734

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7R7A_018 not in the Motif Atlas

Geometric match to HL_5J7L_179

Geometric discrepancy: 0.1248

The information below is about HL_5J7L_179

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_04783.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

7R7A|1|1|C|732
7R7A|1|1|G|733
7R7A|1|1|C|734
7R7A|1|1|A|735
7R7A|1|1|A|736
7R7A|1|1|G|737

Current chains

Chain 1

25S rRNA

Nearby chains