HL_7R7A_023

3D structure

PDB id

7R7A (explore in PDB, NAKB, or RNA 3D Hub)

Description

State E1 nucleolar 60S ribosome biogenesis intermediate - Composite model

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

7R7A|1|1|C|961, 7R7A|1|1|A|962

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7R7A_023 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.1731

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7R7A|1|1|C|958
7R7A|1|1|C|959
7R7A|1|1|U|960
7R7A|1|1|C|961
7R7A|1|1|A|962
7R7A|1|1|G|963

Current chains

Chain 1

25S rRNA

Nearby chains

Chain 7

60S ribosomal subunit assembly/export protein LOC1

Chain J

rRNA-processing protein EBP2

Chain w

27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase