HL_7R7A_059

3D structure

PDB id

7R7A (explore in PDB, NAKB, or RNA 3D Hub)

Description

State E1 nucleolar 60S ribosome biogenesis intermediate - Composite model

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

AUUCU

Length

5 nucleotides

Bulged bases

7R7A|1|6|C|15

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7R7A_059 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.1346

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

7R7A|1|6|A|12
7R7A|1|6|U|13
7R7A|1|6|U|14
7R7A|1|6|C|15
7R7A|1|6|U|16

Current chains

Chain 6

5.8S ribosomal RNA gene and internal transcribed spacer 2

Nearby chains

Chain K

Proteasome-interacting protein CIC1