HL_7RQ8_164

3D structure

PDB id

7RQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

7RQ8|1|2A|A|2268, 7RQ8|1|2A|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7RQ8_164 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0539

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

7RQ8|1|2A|C|2264
7RQ8|1|2A|U|2265
7RQ8|1|2A|A|2266
7RQ8|1|2A|A|2267
7RQ8|1|2A|A|2268
7RQ8|1|2A|A|2269
7RQ8|1|2A|G|2270
7RQ8|1|2A|G|2271
7RQ8|1|2A|U|2272
7RQ8|1|2A|A|2273
7RQ8|1|2A|A|2274
7RQ8|1|2A|C|2275
7RQ8|1|2A|G|2276

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 20

50S ribosomal protein L27

Chain 2Q

50S ribosomal protein L16