HL_7RQ9_107
3D structure
- PDB id
- 7RQ9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.60A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- G(5MC)UCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- 7RQ9|1|1x|U|33
- QA status
- Modified nucleotides: 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7RQ9_107 not in the Motif Atlas
- Homologous match to HL_6CFJ_107
- Geometric discrepancy: 0.0769
- The information below is about HL_6CFJ_107
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 43
Unit IDs
7RQ9|1|1x|G|31
7RQ9|1|1x|5MC|32
7RQ9|1|1x|U|33
7RQ9|1|1x|C|34
7RQ9|1|1x|A|35
7RQ9|1|1x|U|36
7RQ9|1|1x|A|37
7RQ9|1|1x|A|38
7RQ9|1|1x|C|39
Current chains
- Chain 1x
- P-site tRNA
Nearby chains
- Chain 1a
- Small subunit ribosomal RNA; SSU rRNA
- Chain 1i
- 30S ribosomal protein S9
- Chain 1m
- 30S ribosomal protein S13
- Chain 1v
- mRNA
- Chain 1y
- Transfer RNA; tRNA
Coloring options: