HL_7RQA_192

3D structure

PDB id

7RQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GAUUAGAUACC

Length

11 nucleotides

Bulged bases

7RQA|1|2a|U|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7RQA_192 not in the Motif Atlas

Homologous match to HL_4LFB_017

Geometric discrepancy: 0.122

The information below is about HL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

7RQA|1|2a|G|786
7RQA|1|2a|A|787
7RQA|1|2a|U|788
7RQA|1|2a|U|789
7RQA|1|2a|A|790
7RQA|1|2a|G|791
7RQA|1|2a|A|792
7RQA|1|2a|U|793
7RQA|1|2a|A|794
7RQA|1|2a|C|795
7RQA|1|2a|C|796

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2k

30S ribosomal protein S11

Chain 2y

Ribosome-associated inhibitor A