HL_7RQC_042

3D structure

PDB id

7RQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MFI-tripeptidyl-tRNA analog ACCA-IFM at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

UGAUGAG

Length

7 nucleotides

Bulged bases

7RQC|1|1A|U|1739

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7RQC_042 not in the Motif Atlas

Homologous match to HL_7RQB_043

Geometric discrepancy: 0.064

The information below is about HL_7RQB_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43656.2

Basepair signature

cWW-tSH

Number of instances in this motif group

8

Unit IDs

7RQC|1|1A|U|1720
7RQC|1|1A|G|1721
7RQC|1|1A|A|1722
7RQC|1|1A|U|1739
7RQC|1|1A|G|1740
7RQC|1|1A|A|1741
7RQC|1|1A|G|1742

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains