HL_7RQD_156

3D structure

PDB id

7RQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MTI-tripeptidyl-tRNA analog ACCA-ITM, and chloramphenicol at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

7RQD|1|2A|A|2030, 7RQD|1|2A|A|2031, 7RQD|1|2A|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7RQD_156 not in the Motif Atlas

Homologous match to HL_7RQB_050

Geometric discrepancy: 0.046

The information below is about HL_7RQB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

7RQD|1|2A|G|2027
7RQD|1|2A|U|2028
7RQD|1|2A|G|2029
7RQD|1|2A|A|2030
7RQD|1|2A|A|2031
7RQD|1|2A|G|2032
7RQD|1|2A|A|2033
7RQD|1|2A|U|2034
7RQD|1|2A|G|2035
7RQD|1|2A|C|2036

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L32

Chain 2E

50S ribosomal protein L3