HL_7RR5_004

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

UAAGCAUA

Length

8 nucleotides

Bulged bases

7RR5|1|C1|A|40

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7RR5_004 not in the Motif Atlas

Geometric match to HL_4WF9_006

Geometric discrepancy: 0.1238

The information below is about HL_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7RR5|1|C1|U|38
7RR5|1|C1|A|39
7RR5|1|C1|A|40
7RR5|1|C1|G|41
7RR5|1|C1|C|42
7RR5|1|C1|A|43
7RR5|1|C1|U|44
7RR5|1|C1|A|45

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LL

60S ribosomal protein L13

Chain LN

60S ribosomal protein L15-A

Chain La

60S ribosomal protein L28

Chain Lo

60S ribosomal protein L42-A