HL_7RR5_017

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

7RR5|1|C1|C|648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7RR5_017 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.1032

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

7RR5|1|C1|U|640
7RR5|1|C1|C|641
7RR5|1|C1|U|642
7RR5|1|C1|U|643
7RR5|1|C1|G|644
7RR5|1|C1|A|645
7RR5|1|C1|A|646
7RR5|1|C1|A|647
7RR5|1|C1|C|648
7RR5|1|C1|A|649

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LB

RPL3 isoform 1

Chain La

60S ribosomal protein L28

Chain Le

RPL32 isoform 1