HL_7RR5_025

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

7RR5|1|C1|C|959, 7RR5|1|C1|A|962

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7RR5_025 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.2122

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7RR5|1|C1|C|958
7RR5|1|C1|C|959
7RR5|1|C1|U|960
7RR5|1|C1|C|961
7RR5|1|C1|A|962
7RR5|1|C1|G|963

Current chains

Chain C1

25S rRNA

Nearby chains

Chain La

60S ribosomal protein L28

Chain Lb

RPL29 isoform 1

Chain Lo

60S ribosomal protein L42-A