HL_7RR5_035

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

7RR5|1|C1|G|1507, 7RR5|1|C1|U|1511

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7RR5_035 not in the Motif Atlas

Homologous match to HL_8C3A_032

Geometric discrepancy: 0.2118

The information below is about HL_8C3A_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42228.1

Basepair signature

cWW-F

Number of instances in this motif group

12

Unit IDs

7RR5|1|C1|A|1506
7RR5|1|C1|G|1507
7RR5|1|C1|C|1508
7RR5|1|C1|A|1509
7RR5|1|C1|G|1510
7RR5|1|C1|U|1511
7RR5|1|C1|U|1512

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LP

60S ribosomal protein L17-A

Chain LR

60S ribosomal protein L19-A

Chain Ll

60S ribosomal protein L39