HL_7RR5_059

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

UUAAACGAUAACG

Length

13 nucleotides

Bulged bases

7RR5|1|C1|A|2637, 7RR5|1|C1|C|2644

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7RR5_059 not in the Motif Atlas

Homologous match to HL_5TBW_055

Geometric discrepancy: 0.1047

The information below is about HL_5TBW_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

7RR5|1|C1|U|2633
7RR5|1|C1|U|2634
7RR5|1|C1|A|2635
7RR5|1|C1|A|2636
7RR5|1|C1|A|2637
7RR5|1|C1|C|2638
7RR5|1|C1|G|2639
7RR5|1|C1|A|2640
7RR5|1|C1|U|2641
7RR5|1|C1|A|2642
7RR5|1|C1|A|2643
7RR5|1|C1|C|2644
7RR5|1|C1|G|2645

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LI

RPL10 isoform 1

Chain LT

60S ribosomal protein L21-A

Chain Lb

RPL29 isoform 1