HL_7RR5_078

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

7RR5|1|C2|U|158, 7RR5|1|C2|U|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7RR5_078 not in the Motif Atlas

Homologous match to HL_4V88_188

Geometric discrepancy: 0.2477

The information below is about HL_4V88_188

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7RR5|1|C2|G|154
7RR5|1|C2|U|155
7RR5|1|C2|A|156
7RR5|1|C2|A|157
7RR5|1|C2|U|158
7RR5|1|C2|U|159
7RR5|1|C2|C|160

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SG

40S ribosomal protein S6

Chain SY

40S ribosomal protein S24