HL_7RR5_111

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GAUCGGGGCAACUCCAU*C

Length

18 nucleotides

Bulged bases

7RR5|1|C2|G|1696, 7RR5|1|C2|G|1697, 7RR5|1|C2|G|1698, 7RR5|1|C2|G|1699, 7RR5|1|C2|C|1700, 7RR5|1|C2|A|1701, 7RR5|1|C2|A|1702, 7RR5|1|C2|C|1703, 7RR5|1|C2|U|1704, 7RR5|1|C2|C|1705, 7RR5|1|C2|C|1706, 7RR5|1|C2|A|1707

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7RR5_111 not in the Motif Atlas

Geometric match to HL_8C3A_054

Geometric discrepancy: 0.1696

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7RR5|1|C2|G|1692
7RR5|1|C2|A|1693
7RR5|1|C2|U|1708
7RR5|1|C2|C|1709
7RR5|1|C2|G|1696
7RR5|1|C2|G|1697
7RR5|1|C2|G|1698
7RR5|1|C2|G|1699
7RR5|1|C2|C|1700
7RR5|1|C2|A|1701
7RR5|1|C2|A|1702
7RR5|1|C2|C|1703
7RR5|1|C2|U|1704
7RR5|1|C2|C|1705
7RR5|1|C2|C|1706
7RR5|1|C2|A|1707
7RR5|1|C2|U|1708
*
7RR5|1|C2|C|1709

Current chains

Chain C2

18S rRNA

Nearby chains

Chain LW

RPL24A isoform 1