HL_7RR5_114

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CACAUUG

Length

7 nucleotides

Bulged bases

7RR5|1|C3|A|111, 7RR5|1|C3|U|113

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7RR5_114 not in the Motif Atlas

Homologous match to HL_5TBW_075

Geometric discrepancy: 0.1311

The information below is about HL_5TBW_075

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41152.1

Basepair signature

cWW-F-F

Number of instances in this motif group

12

Unit IDs

7RR5|1|C3|C|108
7RR5|1|C3|A|109
7RR5|1|C3|C|110
7RR5|1|C3|A|111
7RR5|1|C3|U|112
7RR5|1|C3|U|113
7RR5|1|C3|G|114

Current chains

Chain C3

5.8S rRNA

Nearby chains

Chain C1

Large subunit ribosomal RNA; LSU rRNA

Chain LX

60S ribosomal protein L25

Chain Lj

Ribosomal protein L37

Chain Ll

60S ribosomal protein L39