HL_7RYG_009

3D structure

PDB id

7RYG (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-TP-6076 complex: E-site tRNA 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CUGGGAAG

Length

8 nucleotides

Bulged bases

7RYG|1|A|A|313

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7RYG_009 not in the Motif Atlas

Geometric match to HL_7A0S_010

Geometric discrepancy: 0.0949

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

21

Unit IDs

7RYG|1|A|C|307
7RYG|1|A|U|308
7RYG|1|A|G|309
7RYG|1|A|G|310
7RYG|1|A|G|311
7RYG|1|A|A|312
7RYG|1|A|A|313
7RYG|1|A|G|314

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L24