HL_7RYG_013

3D structure

PDB id

7RYG (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-TP-6076 complex: E-site tRNA 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

7RYG|1|A|G|410

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7RYG_013 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.093

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7RYG|1|A|G|409
7RYG|1|A|G|410
7RYG|1|A|A|411
7RYG|1|A|C|412
7RYG|1|A|C|413
7RYG|1|A|A|414
7RYG|1|A|U|415
7RYG|1|A|C|416

Current chains

Chain A

23S ribosomal RNA

Nearby chains