HL_7RYH_030

3D structure

PDB id

7RYH (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-TP-6076 complex: Empty 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

GUGAAAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7RYH_030 not in the Motif Atlas

Homologous match to HL_5J7L_165

Geometric discrepancy: 0.1488

The information below is about HL_5J7L_165

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

7RYH|1|A|G|1276
7RYH|1|A|U|1277
7RYH|1|A|G|1278
7RYH|1|A|A|1279
7RYH|1|A|A|1280
7RYH|1|A|A|1281
7RYH|1|A|A|1282
7RYH|1|A|A|1283
7RYH|1|A|C|1284

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L17

Chain R

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32