HL_7RYH_052

3D structure

PDB id

7RYH (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-TP-6076 complex: Empty 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

UAUAAAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7RYH_052 not in the Motif Atlas

Homologous match to HL_5J7L_189

Geometric discrepancy: 0.1578

The information below is about HL_5J7L_189

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

7RYH|1|A|U|2320
7RYH|1|A|A|2321
7RYH|1|A|U|2322
7RYH|1|A|A|2323
7RYH|1|A|A|2324
7RYH|1|A|A|2325
7RYH|1|A|G|2326
7RYH|1|A|G|2327

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain V

50S ribosomal protein L27