HL_7RYH_101

3D structure

PDB id

7RYH (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-TP-6076 complex: Empty 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

(PSU)GCUAACG

Length

8 nucleotides

Bulged bases

7RYH|1|A|U|955, 7RYH|1|A|C|958

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7RYH_101 not in the Motif Atlas

Homologous match to HL_5J7L_211

Geometric discrepancy: 0.135

The information below is about HL_5J7L_211

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

7RYH|1|A|PSU|952
7RYH|1|A|G|953
7RYH|1|A|C|954
7RYH|1|A|U|955
7RYH|1|A|A|956
7RYH|1|A|A|957
7RYH|1|A|C|958
7RYH|1|A|G|959

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain L

50S ribosomal protein L16