HL_7S0S_035

3D structure

PDB id

7S0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. tuberculosis ribosomal RNA methyltransferase TlyA bound to M. smegmatis 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GUGAGAACC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7S0S_035 not in the Motif Atlas

Homologous match to HL_4WF9_032

Geometric discrepancy: 0.1105

The information below is about HL_4WF9_032

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

7S0S|1|C|G|1396
7S0S|1|C|U|1397
7S0S|1|C|G|1398
7S0S|1|C|A|1399
7S0S|1|C|G|1400
7S0S|1|C|A|1401
7S0S|1|C|A|1402
7S0S|1|C|C|1403
7S0S|1|C|C|1404

Current chains

Chain C

23S rRNA

Nearby chains

Chain P

50S ribosomal protein L17

Chain U

50S ribosomal protein L22

Chain c

50S ribosomal protein L32